FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7920, 346 aa
  1>>>pF1KB7920 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6320+/-0.000975; mu= 13.7179+/- 0.058
 mean_var=58.7802+/-11.589, 0's: 0 Z-trim(102.9): 12  B-trim: 2 in 1/51
 Lambda= 0.167286
 statistics sampled from 7140 (7143) to 7140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.219), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS4901.1 POLR1C gene_id:9533|Hs108|chr6          ( 346) 2292 561.8  3e-160
CCDS10782.1 POLR2C gene_id:5432|Hs108|chr16        ( 275)  344 91.6 8.1e-19


>>CCDS4901.1 POLR1C gene_id:9533|Hs108|chr6               (346 aa)
 initn: 2292 init1: 2292 opt: 2292  Z-score: 2990.5  bits: 561.8 E(32554): 3e-160
Smith-Waterman score: 2292; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB7 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
              250       260       270       280       290       300

              310       320       330       340      
pF1KB7 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
              310       320       330       340      

>>CCDS10782.1 POLR2C gene_id:5432|Hs108|chr16             (275 aa)
 initn: 354 init1: 185 opt: 344  Z-score: 451.4  bits: 91.6 E(32554): 8.1e-19
Smith-Waterman score: 344; 32.7% identity (64.9% similar) in 205 aa overlap (51-251:9-202)

               30        40        50        60        70        80
pF1KB7 VRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRIL
                                     : .... .....: . . : :.::..::..
CCDS10                       MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVF
                                     10        20        30        

               90       100       110          120       130       
pF1KB7 LAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDT
       .:::: .:.. : .  :.:...::..::::::::. .:    .:   :.   ::     .
CCDS10 IAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECS
       40        50        60        70        80        90        

       140       150       160       170       180        190      
pF1KB7 LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA-DLFPEGTIRPVHDD
       ..: :.:::  :   ..  .. . .  . .:       ::. ..  :  :.  ..  .::
CCDS10 VEFTLDVRC--NEDQTRHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE--QDD
      100         110       120              130       140         

        200       210       220       230       240       250      
pF1KB7 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRC
       :::..:: :::. :  .  ::.::.:::..:.: ....  :: .: . :  .  :     
CCDS10 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSE
       150       160       170       180       190       200       

        260       270       280       290       300       310      
pF1KB7 FSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVL
                                                                   
CCDS10 YSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEI
       210       220       230       240       250       260       




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:37:52 2016 done: Sat Nov  5 14:37:52 2016
 Total Scan time:  2.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]