Result of FASTA (omim) for
pF1KB7920
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7920, 346 aa
1>>>pF1KB7920 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4607+/-0.000437; mu= 14.8831+/- 0.027
mean_var=59.9211+/-11.671, 0's: 0 Z-trim(109.7): 12 B-trim: 18 in 1/51
Lambda= 0.165685
statistics sampled from 17910 (17915) to 17910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.21), width: 16
Scan time: 7.310
The best scores are: opt bits E(85289)
NP_976035 (OMIM: 248390,610060,616494) DNA-directe ( 346) 2292 556.6 2.8e-158
XP_011513302 (OMIM: 248390,610060,616494) PREDICTE ( 307) 2040 496.4 3.4e-140
NP_001305805 (OMIM: 248390,610060,616494) DNA-dire ( 342) 2040 496.4 3.8e-140
NP_116558 (OMIM: 180663) DNA-directed RNA polymera ( 275) 344 91.0 3.4e-18
>>NP_976035 (OMIM: 248390,610060,616494) DNA-directed RN (346 aa)
initn: 2292 init1: 2292 opt: 2292 Z-score: 2962.6 bits: 556.6 E(85289): 2.8e-158
Smith-Waterman score: 2292; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)
10 20 30 40 50 60
pF1KB7 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
250 260 270 280 290 300
310 320 330 340
pF1KB7 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
::::::::::::::::::::::::::::::::::::::::::::::
NP_976 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
310 320 330 340
>>XP_011513302 (OMIM: 248390,610060,616494) PREDICTED: D (307 aa)
initn: 2040 init1: 2040 opt: 2040 Z-score: 2637.9 bits: 496.4 E(85289): 3.4e-140
Smith-Waterman score: 2040; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB7 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
250 260 270 280 290 300
310 320 330 340
pF1KB7 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
:::::::
XP_011 RVRDHYI
>>NP_001305805 (OMIM: 248390,610060,616494) DNA-directed (342 aa)
initn: 2040 init1: 2040 opt: 2040 Z-score: 2637.1 bits: 496.4 E(85289): 3.8e-140
Smith-Waterman score: 2040; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB7 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
250 260 270 280 290 300
310 320 330 340
pF1KB7 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
:::::::
NP_001 RVRDHYICKKDLLAAVAHTCNPSTLGGQGEWITGSRERDHPG
310 320 330 340
>>NP_116558 (OMIM: 180663) DNA-directed RNA polymerase I (275 aa)
initn: 354 init1: 185 opt: 344 Z-score: 447.7 bits: 91.0 E(85289): 3.4e-18
Smith-Waterman score: 344; 32.7% identity (64.9% similar) in 205 aa overlap (51-251:9-202)
30 40 50 60 70 80
pF1KB7 VRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRIL
: .... .....: . . : :.::..::..
NP_116 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVF
10 20 30
90 100 110 120 130
pF1KB7 LAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDT
.:::: .:.. : . :.:...::..::::::::. .: .: :. :: .
NP_116 IAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECS
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA-DLFPEGTIRPVHDD
..: :.::: : .. .. . . . .: ::. .. : :. .. .::
NP_116 VEFTLDVRC--NEDQTRHVTSRDLISNSPRV-------IPVTSRNRDNDPNDYVE--QDD
100 110 120 130 140
200 210 220 230 240 250
pF1KB7 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRC
:::..:: :::. : . ::.::.:::..:.: .... :: .: . : . :
NP_116 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSE
150 160 170 180 190 200
260 270 280 290 300 310
pF1KB7 FSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVL
NP_116 YSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEI
210 220 230 240 250 260
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:37:52 2016 done: Sat Nov 5 14:37:53 2016
Total Scan time: 7.310 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]