Result of FASTA (ccds) for
pF1KB7921
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7921, 181 aa
1>>>pF1KB7921 181 - 181 aa - 181 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5325+/-0.000728; mu= 8.6682+/- 0.044
mean_var=127.9414+/-25.075, 0's: 0 Z-trim(112.9): 57 B-trim: 0 in 0/54
Lambda= 0.113388
statistics sampled from 13536 (13593) to 13536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.418), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS1506.1 ATF3 gene_id:467|Hs108|chr1 ( 181) 1171 201.7 2.1e-52
CCDS58059.1 ATF3 gene_id:467|Hs108|chr1 ( 124) 785 138.4 1.6e-33
CCDS41464.1 ATF3 gene_id:467|Hs108|chr1 ( 135) 756 133.7 4.6e-32
CCDS55688.1 ATF3 gene_id:467|Hs108|chr1 ( 106) 478 88.1 1.9e-18
CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14 ( 174) 435 81.3 3.5e-16
CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14 ( 163) 430 80.4 5.9e-16
>>CCDS1506.1 ATF3 gene_id:467|Hs108|chr1 (181 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 1054.4 bits: 201.7 E(32554): 2.1e-52
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
130 140 150 160 170 180
pF1KB7 S
:
CCDS15 S
>>CCDS58059.1 ATF3 gene_id:467|Hs108|chr1 (124 aa)
initn: 785 init1: 785 opt: 785 Z-score: 715.3 bits: 138.4 E(32554): 1.6e-33
Smith-Waterman score: 785; 100.0% identity (100.0% similar) in 124 aa overlap (58-181:1-124)
30 40 50 60 70 80
pF1KB7 SLVFEDFANLTPFVKEELRFAIQNKHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDE
::::::::::::::::::::::::::::::
CCDS58 MSSALESVTVSDRPLGVSITKAEVAPEEDE
10 20 30
90 100 110 120 130 140
pF1KB7 RKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLN
40 50 60 70 80 90
150 160 170 180
pF1KB7 LHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS
::::::::::::::::::::::::::::::::::
CCDS58 LHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS
100 110 120
>>CCDS41464.1 ATF3 gene_id:467|Hs108|chr1 (135 aa)
initn: 756 init1: 756 opt: 756 Z-score: 689.2 bits: 133.7 E(32554): 4.6e-32
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
CCDS41 FWVQKTCIWAVDSCK
130
>>CCDS55688.1 ATF3 gene_id:467|Hs108|chr1 (106 aa)
initn: 478 init1: 478 opt: 478 Z-score: 444.8 bits: 88.1 E(32554): 1.9e-18
Smith-Waterman score: 496; 75.0% identity (75.0% similar) in 116 aa overlap (1-116:1-87)
10 20 30 40 50 60
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFAIQNKHLCHRMSS
::::::::::::: ::::::::::::::::::
CCDS55 MMLQHPGQVSASE-----------------------------EELRFAIQNKHLCHRMSS
10 20 30
70 80 90 100 110 120
pF1KB7 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKLPRP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 LESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQ
CCDS55 FWVQKTCIWAVDSCK
100
>>CCDS45139.1 JDP2 gene_id:122953|Hs108|chr14 (174 aa)
initn: 550 init1: 419 opt: 435 Z-score: 403.9 bits: 81.3 E(32554): 3.5e-16
Smith-Waterman score: 445; 48.8% identity (73.3% similar) in 172 aa overlap (6-176:14-173)
10 20 30 40 50
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQN
:::. :..... : :.: .: . .. :::..: :.:
CCDS45 MVAGWPATPPAMMPGQIPDPSVTTGSL-PGLGPLTGL------PSSALTVEELKYADIRN
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 KHLCHRMSSALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKT
:: : .. :: : :.:. ::.::.:::::.::.:::.:::::::.:
CCDS45 LGAMIAPLHFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERT
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 ECLQKESEKLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFI
: ::.:::.:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ..
CCDS45 EFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLL
110 120 130 140 150 160
180
pF1KB7 QQIKEGTLQS
.:...
CCDS45 EQLEKK
170
>>CCDS9842.1 JDP2 gene_id:122953|Hs108|chr14 (163 aa)
initn: 514 init1: 419 opt: 430 Z-score: 399.9 bits: 80.4 E(32554): 5.9e-16
Smith-Waterman score: 445; 48.8% identity (73.3% similar) in 172 aa overlap (6-176:3-162)
10 20 30 40 50
pF1KB7 MMLQHPGQVSASEVSASAIVPCLSPPGSLVFEDFANLTPFVKEELRFA-IQNKHLCHRMS
:::. :..... : :.: .: . .. :::..: :.:
CCDS98 MMPGQIPDPSVTTGSL-PGLGPLTGL------PSSALTVEELKYADIRNLGAMIAPL
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 SALESVTVSDRPLGVSITKAEVAPEEDERKKRRRERNKIAAAKCRNKKKEKTECLQKESE
:: : .. :: : :.:. ::.::.:::::.::.:::.:::::::.:: ::.:::
CCDS98 HFLE-VKLGKRPQPV---KSEL-DEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESE
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 KLESVNAELKAQIEELKNEKQHLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTL
.:: .:::::.::::::.:.:.:: ::: ::::::::... .:::.: : ...:...
CCDS98 RLELMNAELKTQIEELKQERQQLILMLNRHRPTCIVRTDSVKTPESEGNPLLEQLEKK
110 120 130 140 150 160
180
pF1KB7 QS
181 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:38:26 2016 done: Sat Nov 5 14:38:26 2016
Total Scan time: 2.170 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]