Result of FASTA (ccds) for
pF1KB7927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7927, 200 aa
1>>>pF1KB7927 200 - 200 aa - 200 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2752+/-0.000705; mu= 13.8271+/- 0.043
mean_var=65.0000+/-12.874, 0's: 0 Z-trim(109.5): 69 B-trim: 0 in 0/50
Lambda= 0.159081
statistics sampled from 10884 (10953) to 10884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.336), width: 16
Scan time: 2.140
The best scores are: opt bits E(32554)
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 1310 308.8 1.5e-84
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 873 208.4 1.9e-54
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 ( 149) 836 199.9 6.5e-52
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 444 109.9 7.9e-25
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 413 102.8 1.1e-22
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 405 101.0 3.8e-22
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 405 101.0 3.8e-22
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 400 99.8 8.5e-22
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 397 99.1 1.4e-21
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 383 95.9 1.1e-20
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 380 95.2 2.1e-20
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 381 95.5 2.2e-20
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 375 94.0 3.8e-20
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 364 91.5 2e-19
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 366 92.1 2.5e-19
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 365 91.9 3e-19
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 363 91.4 3.8e-19
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 359 90.4 6.2e-19
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 358 90.2 7.9e-19
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 320 81.6 4e-16
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 317 80.8 4.7e-16
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 316 80.6 5.5e-16
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 315 80.4 7.6e-16
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 309 79.0 1.9e-15
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 307 78.5 2.2e-15
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 301 77.1 4.9e-15
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 296 76.0 1.3e-14
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 286 73.7 6.5e-14
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 282 72.8 1.6e-13
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 270 70.1 9.8e-13
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 264 68.6 2.2e-12
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 262 68.2 3.1e-12
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 253 66.1 1e-11
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 250 65.5 2.3e-11
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 ( 153) 249 65.2 2.4e-11
CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 ( 164) 244 64.1 5.6e-11
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 240 63.1 9.9e-11
>>CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 (200 aa)
initn: 1310 init1: 1310 opt: 1310 Z-score: 1631.5 bits: 308.8 E(32554): 1.5e-84
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
130 140 150 160 170 180
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
CCDS33 VALSSKSWDVETATELLLSN
190 200
>>CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 (157 aa)
initn: 870 init1: 870 opt: 873 Z-score: 1091.1 bits: 208.4 E(32554): 1.9e-54
Smith-Waterman score: 914; 78.5% identity (78.5% similar) in 200 aa overlap (1-200:1-157)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::: ::::
CCDS47 EPDDPQDAVVANQ-------------------------------------------NAVI
130
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
CCDS47 VALSSKSWDVETATELLLSN
140 150
>>CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 (149 aa)
initn: 836 init1: 836 opt: 836 Z-score: 1045.5 bits: 199.9 E(32554): 6.5e-52
Smith-Waterman score: 848; 74.5% identity (74.5% similar) in 200 aa overlap (1-200:1-149)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
:::::::::::::::::::::
CCDS47 MANIAVQRIKREFKEVLKSEE---------------------------------------
10 20
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ------------VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
30 40 50 60
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
70 80 90 100 110 120
190 200
pF1KB7 VALSSKSWDVETATELLLSN
::::::::::::::::::::
CCDS47 VALSSKSWDVETATELLLSN
130 140
>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa)
initn: 439 init1: 244 opt: 444 Z-score: 559.2 bits: 109.9 E(32554): 7.9e-25
Smith-Waterman score: 444; 47.9% identity (72.9% similar) in 144 aa overlap (10-153:6-148)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.: .::. . ::.. . : .. :::: :.:.::: ..::.
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLEL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
.:: ::. :::::.:::.:::.... : ::::::::.:. :. .::::::.::::.:
CCDS31 FLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: ::.:.: : . .::: :...::
CCDS31 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
120 130 140 150
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 403 init1: 214 opt: 413 Z-score: 521.0 bits: 102.8 E(32554): 1.1e-22
Smith-Waterman score: 413; 42.0% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:. .. .. . : .. : ... . .. : :: :.::.:: . : :
CCDS54 MALKRIQKELTDLQRDPPA---QCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :::.::::.: .:.::::::..::. :.:. ::::. .::
CCDS54 HFPTDYPFKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .:. :: . : ... :: :.. ::
CCDS54 NPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 392 init1: 205 opt: 405 Z-score: 511.0 bits: 101.0 E(32554): 3.8e-22
Smith-Waterman score: 405; 40.0% identity (73.3% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . . .. : ... . .. : ::::. :.:: . : .
CCDS72 MALKRIQKELSDLQRDPPA---HCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTV
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::. : :::.::::.: .:.::::::..::. :.:. ::::. .::
CCDS72 HFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .:. ::.. : ... :: :.. ::
CCDS72 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 393 init1: 207 opt: 405 Z-score: 511.0 bits: 101.0 E(32554): 3.8e-22
Smith-Waterman score: 405; 41.3% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . : .. : ... . .. : :: :.::.:: . : :
CCDS43 MALKRIHKELNDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :.:.::::.: .:.::::::..::. :.:. ::::. .::
CCDS43 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .: :: . : ... :: :.. ::
CCDS43 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 386 init1: 205 opt: 400 Z-score: 504.8 bits: 99.8 E(32554): 8.5e-22
Smith-Waterman score: 400; 40.7% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . : .. : ... . .. : :: :.::.:: . : :
CCDS36 MALKRINKELSDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :.:.::::.: .:.::::::..::. :.:. ::::. .::
CCDS36 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .: :: . . ... :: :.. ::
CCDS36 NPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 383 init1: 205 opt: 397 Z-score: 501.1 bits: 99.1 E(32554): 1.4e-21
Smith-Waterman score: 397; 40.0% identity (72.0% similar) in 150 aa overlap (4-153:1-146)
10 20 30 40 50 60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
.:..::..:.... .. . : .. : ... . .. : :: :.::.:: . : :
CCDS36 MALKRINKELSDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
..: :::.:::: : :.:.::::.: .:.::::::..::. :.:. ::::. .::
CCDS36 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
.:::: .: :: . . ... .: :.. ::
CCDS36 NPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
190 200
pF1KB7 VALSSKSWDVETATELLLSN
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 390 init1: 200 opt: 383 Z-score: 485.2 bits: 95.9 E(32554): 1.1e-20
Smith-Waterman score: 383; 50.5% identity (73.9% similar) in 111 aa overlap (43-153:8-117)
20 30 40 50 60 70
pF1KB7 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK
: :: :.::.:: . : :..: :::.:::
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPK
10 20 30
80 90 100 110 120 130
pF1KB7 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAN
: : :.:.::::.: .:.::::::..::. :.:. ::::. .:: .:::: .:
CCDS47 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 QYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVET
:: . : ... :: :.. ::
CCDS47 IYKTDREKYNRIAREWTQKYAM
100 110
200 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:39:04 2016 done: Sat Nov 5 14:39:04 2016
Total Scan time: 2.140 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]