Result of FASTA (ccds) for
pF1KB7928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7928, 200 aa
1>>>pF1KB7928 200 - 200 aa - 200 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9372+/-0.000582; mu= 12.3512+/- 0.036
mean_var=85.1753+/-16.654, 0's: 0 Z-trim(114.3): 14 B-trim: 20 in 1/52
Lambda= 0.138969
statistics sampled from 14907 (14916) to 14907 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.458), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS14530.1 TSC22D3 gene_id:1831|Hs108|chrX ( 200) 1327 274.5 3e-74
CCDS14531.1 TSC22D3 gene_id:1831|Hs108|chrX ( 134) 591 126.9 5.7e-30
CCDS35365.1 TSC22D3 gene_id:1831|Hs108|chrX ( 77) 493 107.1 3e-24
CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13 ( 144) 405 89.6 1e-18
CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13 (1073) 404 89.9 6.1e-18
CCDS5695.1 TSC22D4 gene_id:81628|Hs108|chr7 ( 395) 344 77.6 1.1e-14
CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3 ( 780) 339 76.8 3.9e-14
CCDS73565.1 TSC22D1 gene_id:8848|Hs108|chr13 ( 86) 311 70.6 3.1e-13
>>CCDS14530.1 TSC22D3 gene_id:1831|Hs108|chrX (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1446.5 bits: 274.5 E(32554): 3e-74
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
CCDS14 PEEPAPESPQVPEAPGGSAV
190 200
>>CCDS14531.1 TSC22D3 gene_id:1831|Hs108|chrX (134 aa)
initn: 591 init1: 591 opt: 591 Z-score: 651.6 bits: 126.9 E(32554): 5.7e-30
Smith-Waterman score: 591; 98.9% identity (100.0% similar) in 95 aa overlap (106-200:40-134)
80 90 100 110 120 130
pF1KB7 PVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAV
.:::::::::::::::::::::::::::::
CCDS14 MEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAV
10 20 30 40 50 60
140 150 160 170 180 190
pF1KB7 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
70 80 90 100 110 120
200
pF1KB7 GGSAV
:::::
CCDS14 GGSAV
130
>>CCDS35365.1 TSC22D3 gene_id:1831|Hs108|chrX (77 aa)
initn: 493 init1: 493 opt: 493 Z-score: 548.9 bits: 107.1 E(32554): 3e-24
Smith-Waterman score: 493; 100.0% identity (100.0% similar) in 77 aa overlap (124-200:1-77)
100 110 120 130 140 150
pF1KB7 IDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKN
::::::::::::::::::::::::::::::
CCDS35 MDLVKNHLMYAVREEVEILKEQIRELVEKN
10 20 30
160 170 180 190 200
pF1KB7 SQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV
40 50 60 70
>>CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13 (144 aa)
initn: 410 init1: 379 opt: 405 Z-score: 449.6 bits: 89.6 E(32554): 1e-18
Smith-Waterman score: 405; 73.6% identity (86.8% similar) in 91 aa overlap (106-195:41-131)
80 90 100 110 120 130
pF1KB7 PVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAV
.:.::::::::::::::::::::.::::::
CCDS93 MDLGVYQLRHFSISFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYAV
20 30 40 50 60 70
140 150 160 170 180 190
pF1KB7 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCL-SPEEPAPESPQVPEA
:::::.:::::.::.:::::::.::.::::::::::: .::. : . :: .::
CCDS93 REEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQ
80 90 100 110 120 130
200
pF1KB7 PGGSAV
:
CCDS93 PPAQPASQGSGPTA
140
>>CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13 (1073 aa)
initn: 403 init1: 379 opt: 404 Z-score: 435.6 bits: 89.9 E(32554): 6.1e-18
Smith-Waterman score: 404; 74.4% identity (86.7% similar) in 90 aa overlap (107-195:971-1060)
80 90 100 110 120 130
pF1KB7 VLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVR
:.::::::::::::::::::::.:::::::
CCDS31 GSSSSLAASASLFPLKVLPLTTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVR
950 960 970 980 990 1000
140 150 160 170 180 190
pF1KB7 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCL-SPEEPAPESPQVPEAP
::::.:::::.::.:::::::.::.::::::::::: .::. : . :: .:: :
CCDS31 EEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQP
1010 1020 1030 1040 1050 1060
200
pF1KB7 GGSAV
CCDS31 PAQPASQGSGPTA
1070
>>CCDS5695.1 TSC22D4 gene_id:81628|Hs108|chr7 (395 aa)
initn: 323 init1: 299 opt: 344 Z-score: 377.0 bits: 77.6 E(32554): 1.1e-14
Smith-Waterman score: 344; 66.7% identity (87.4% similar) in 87 aa overlap (107-191:310-395)
80 90 100 110 120 130
pF1KB7 VLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVR
:.:: :.:.:::::::::::::.:::.:::
CCDS56 PDPFGAVAAQKFSLAHSMLAISGHLDSDDDSGSG-SLVGIDNKIEQAMDLVKSHLMFAVR
280 290 300 310 320 330
140 150 160 170 180 190
pF1KB7 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPE--EPAPESPQVPEA
::::.::::::::.:.:. ::.:: ::..::::::: .. : :. :::..:.:
CCDS56 EEVEVLKEQIRELAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNGPSV
340 350 360 370 380 390
200
pF1KB7 PGGSAV
>>CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3 (780 aa)
initn: 336 init1: 336 opt: 339 Z-score: 367.2 bits: 76.8 E(32554): 3.9e-14
Smith-Waterman score: 342; 56.5% identity (75.9% similar) in 108 aa overlap (104-199:674-779)
80 90 100 110 120 130
pF1KB7 LEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMY
.. ::::..::::::::::::::::.::::
CCDS31 AIPVDGDEDRNPSTAFYQAFHLNTLKESKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMY
650 660 670 680 690 700
140 150 160 170 180
pF1KB7 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKF------------QSCLSP
:::::::.:::::.::::.:: :::::.:::.:.: .:: .. :. .
CCDS31 AVREEVEVLKEQIKELVERNSLLERENALLKSLSSNDQLSQLPTQQANPGSTSQQQAVIA
710 720 730 740 750 760
190 200
pF1KB7 EEPAPESPQVPEAPGGSAV
. : : .: :. :. :.
CCDS31 QPPQPTQP--PQQPNVSSA
770 780
>>CCDS73565.1 TSC22D1 gene_id:8848|Hs108|chr13 (86 aa)
initn: 319 init1: 292 opt: 311 Z-score: 351.0 bits: 70.6 E(32554): 3.1e-13
Smith-Waterman score: 311; 69.9% identity (83.6% similar) in 73 aa overlap (124-195:1-73)
100 110 120 130 140 150
pF1KB7 IDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKN
:::::.:::::::::::.:::::.::.:::
CCDS73 MDLVKSHLMYAVREEVEVLKEQIKELIEKN
10 20 30
160 170 180 190 200
pF1KB7 SQLERENTLLKTLASPEQLEKFQSCL-SPEEPAPESPQVPEAPGGSAV
::::.::.::::::::::: .::. : . :: .:: :
CCDS73 SQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
40 50 60 70 80
200 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:11:07 2016 done: Sat Nov 5 10:11:08 2016
Total Scan time: 2.340 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]