FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7929, 352 aa
  1>>>pF1KB7929 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4604+/-0.000825; mu= 17.1926+/- 0.050
 mean_var=93.3556+/-18.900, 0's: 0 Z-trim(108.7): 55  B-trim: 3 in 1/52
 Lambda= 0.132741
 statistics sampled from 10323 (10375) to 10323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.319), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS7156.1 MKX gene_id:283078|Hs108|chr10          ( 352) 2341 458.3 4.4e-129


>>CCDS7156.1 MKX gene_id:283078|Hs108|chr10               (352 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2430.9  bits: 458.3 E(32554): 4.4e-129
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
              310       320       330       340       350  




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:39:38 2016 done: Sat Nov  5 14:39:38 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]