FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7937, 376 aa
  1>>>pF1KB7937 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3570+/-0.00111; mu= -4.5821+/- 0.067
 mean_var=294.5648+/-60.817, 0's: 0 Z-trim(113.2): 40  B-trim: 366 in 1/52
 Lambda= 0.074728
 statistics sampled from 13843 (13875) to 13843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.426), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS9873.1 GTF2A1 gene_id:2957|Hs108|chr14         ( 376) 2492 281.7 7.3e-76
CCDS9874.1 GTF2A1 gene_id:2957|Hs108|chr14         ( 337) 2246 255.2 6.4e-68


>>CCDS9873.1 GTF2A1 gene_id:2957|Hs108|chr14              (376 aa)
 initn: 2492 init1: 2492 opt: 2492  Z-score: 1475.5  bits: 281.7 E(32554): 7.3e-76
Smith-Waterman score: 2492; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB7 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PDSKLIQHMNASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PDSKLIQHMNASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AAPTPAQAQITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AAPTPAQAQITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL
              310       320       330       340       350       360

              370      
pF1KB7 NGRDYIFSKAIGDAEW
       ::::::::::::::::
CCDS98 NGRDYIFSKAIGDAEW
              370      

>>CCDS9874.1 GTF2A1 gene_id:2957|Hs108|chr14              (337 aa)
 initn: 2246 init1: 2246 opt: 2246  Z-score: 1332.8  bits: 255.2 E(32554): 6.4e-68
Smith-Waterman score: 2246; 100.0% identity (100.0% similar) in 337 aa overlap (40-376:1-337)

      10        20        30        40        50        60         
pF1KB7 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQ
                                     ::::::::::::::::::::::::::::::
CCDS98                               MELKTLWENKLMQSRAVDGFHSEEQQLLLQ
                                             10        20        30

      70        80        90       100       110       120         
pF1KB7 VQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHM
               40        50        60        70        80        90

     130       140       150       160       170       180         
pF1KB7 NASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NASNMSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVI
              100       110       120       130       140       150

     190       200       210       220       230       240         
pF1KB7 PQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQ
              160       170       180       190       200       210

     250       260       270       280       290       300         
pF1KB7 ITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQV
              220       230       240       250       260       270

     310       320       330       340       350       360         
pF1KB7 EEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 EEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK
              280       290       300       310       320       330

     370      
pF1KB7 AIGDAEW
       :::::::
CCDS98 AIGDAEW
              




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:40:47 2016 done: Sat Nov  5 14:40:47 2016
 Total Scan time:  3.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]