FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7943, 377 aa
  1>>>pF1KB7943 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4771+/-0.000896; mu= 5.8519+/- 0.055
 mean_var=258.6299+/-52.429, 0's: 0 Z-trim(115.4): 144  B-trim: 0 in 0/50
 Lambda= 0.079751
 statistics sampled from 15853 (16006) to 15853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.492), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS536.1 DMBX1 gene_id:127343|Hs108|chr1          ( 377) 2509 301.2   1e-81


>>CCDS536.1 DMBX1 gene_id:127343|Hs108|chr1               (377 aa)
 initn: 2509 init1: 2509 opt: 2509  Z-score: 1580.8  bits: 301.2 E(32554): 1e-81
Smith-Waterman score: 2509; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
              310       320       330       340       350       360

              370       
pF1KB7 LRAKQHAASLGLDTLPN
       :::::::::::::::::
CCDS53 LRAKQHAASLGLDTLPN
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:27:11 2016 done: Sat Nov  5 16:27:12 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]