Result of FASTA (omim) for
pF1KB7943
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7943, 377 aa
1>>>pF1KB7943 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1242+/-0.00036; mu= 7.9764+/- 0.023
mean_var=269.6296+/-54.409, 0's: 0 Z-trim(123.2): 212 B-trim: 37 in 1/54
Lambda= 0.078107
statistics sampled from 42408 (42679) to 42408 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.5), width: 16
Scan time: 10.780
The best scores are: opt bits E(85289)
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 2509 295.3 1.5e-79
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 2509 295.3 1.5e-79
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 2509 295.3 1.5e-79
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 2489 293.1 7.2e-79
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 358 52.8 1.2e-06
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 338 50.6 5.7e-06
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 324 49.0 1.6e-05
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 323 49.0 2e-05
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 323 49.0 2.1e-05
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 319 48.5 2.6e-05
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 318 48.5 3.3e-05
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 318 48.5 3.3e-05
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 314 47.8 3.4e-05
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 316 48.2 3.5e-05
NP_001186699 (OMIM: 600036) homeobox protein OTX1 ( 354) 316 48.2 3.5e-05
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 318 48.6 3.7e-05
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 318 48.6 3.7e-05
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 318 48.6 3.7e-05
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 319 48.8 3.7e-05
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 318 48.6 3.8e-05
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 314 48.0 4.5e-05
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 311 47.5 4.6e-05
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 311 47.5 4.6e-05
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289) 311 47.5 4.6e-05
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 304 46.6 6.9e-05
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 307 47.2 7.3e-05
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 302 46.4 7.7e-05
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 300 46.1 8.4e-05
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 304 46.8 8.6e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 300 46.2 0.0001
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 300 46.3 0.00012
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 300 46.3 0.00012
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 300 46.3 0.00012
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 303 46.9 0.00012
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 298 46.0 0.00012
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 303 46.9 0.00012
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297) 298 46.1 0.00013
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297) 298 46.1 0.00013
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 298 46.1 0.00013
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 294 45.4 0.00014
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 294 45.5 0.00016
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 294 45.6 0.00017
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 294 45.6 0.00017
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 294 45.6 0.00017
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 299 46.5 0.00017
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 294 45.7 0.00019
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 293 45.6 0.00021
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 291 45.3 0.00022
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 291 45.3 0.00022
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 290 45.2 0.00025
>>NP_757379 (OMIM: 607410) diencephalon/mesencephalon ho (377 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 1549.2 bits: 295.3 E(85289): 1.5e-79
Smith-Waterman score: 2509; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_757 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
310 320 330 340 350 360
370
pF1KB7 LRAKQHAASLGLDTLPN
:::::::::::::::::
NP_757 LRAKQHAASLGLDTLPN
370
>>XP_011538970 (OMIM: 607410) PREDICTED: diencephalon/me (377 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 1549.2 bits: 295.3 E(85289): 1.5e-79
Smith-Waterman score: 2509; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
310 320 330 340 350 360
370
pF1KB7 LRAKQHAASLGLDTLPN
:::::::::::::::::
XP_011 LRAKQHAASLGLDTLPN
370
>>XP_016855778 (OMIM: 607410) PREDICTED: diencephalon/me (377 aa)
initn: 2509 init1: 2509 opt: 2509 Z-score: 1549.2 bits: 295.3 E(85289): 1.5e-79
Smith-Waterman score: 2509; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLR
310 320 330 340 350 360
370
pF1KB7 LRAKQHAASLGLDTLPN
:::::::::::::::::
XP_016 LRAKQHAASLGLDTLPN
370
>>NP_671725 (OMIM: 607410) diencephalon/mesencephalon ho (382 aa)
initn: 2495 init1: 2169 opt: 2489 Z-score: 1536.9 bits: 293.1 E(85289): 7.2e-79
Smith-Waterman score: 2489; 98.7% identity (98.7% similar) in 382 aa overlap (1-377:1-382)
10 20 30 40 50
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLA-----DIIL
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_671 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLAGCTFQDIIL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 EARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 EARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 NRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 LSLSEQSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 LSLSEQSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 TPVAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 TPVAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB7 AVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 AVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTS
310 320 330 340 350 360
360 370
pF1KB7 IENLRLRAKQHAASLGLDTLPN
::::::::::::::::::::::
NP_671 IENLRLRAKQHAASLGLDTLPN
370 380
>>NP_000545 (OMIM: 120970,268000,602225,613829) cone-rod (299 aa)
initn: 360 init1: 298 opt: 358 Z-score: 240.4 bits: 52.8 E(85289): 1.2e-06
Smith-Waterman score: 398; 39.3% identity (58.8% similar) in 257 aa overlap (31-257:3-254)
10 20 30 40 50
pF1KB7 MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEAR-Y
: : . ::.::.:. .:.. .: :
NP_000 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPY
10 20 30
60 70 80 90 100 110
pF1KB7 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA
: ::::: ::.:: .::: :: : ::.:::: ::..:. ::::.:::::::::::
NP_000 PSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRA
40 50 60 70 80 90
120 130 140 150 160
pF1KB7 KFRKKQRSLQKEQLQKQK-EAEGSHGEGKA-EAPTPDTQL--------DTEQPPRLPG-S
: :. ::. ::.: : .:.. .. :: .: :.:.. :. .:: ::: :
NP_000 KCRQ-QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPP-LPGPS
100 110 120 130 140 150
170 180 190 200 210
pF1KB7 DPPAELHLSLSEQS-ASESA-PEDQ--------PDREEDPRAGA--------EDPKAEKS
:. ..: : :::: :: : :. : : . .:.: :
NP_000 GSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGS
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB7 PGADSKGLGCKRGSPKADSPGSLTITPVAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMA
:.. .:: :: . . :. ...:.. : .::: . : . ::
NP_000 PSSYFSGLD-PYLSPMVPQLGGPALSPLS--GPSVGPSLAQSPTSLSGQSYGAYSPVDSL
220 230 240 250 260
280 290 300 310 320 330
pF1KB7 ATNNLVHYSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQGVW
NP_000 EFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL
270 280 290
>>NP_005020 (OMIM: 107250,602669,610623) pituitary homeo (302 aa)
initn: 447 init1: 305 opt: 338 Z-score: 228.1 bits: 50.6 E(85289): 5.7e-06
Smith-Waterman score: 348; 34.4% identity (56.7% similar) in 247 aa overlap (60-290:56-289)
30 40 50 60 70 80
pF1KB7 QAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTH
:: ..::::.:: ::.:::. :: :::...
NP_005 PQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNR
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB7 YPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAE
:::. ::..:. ::: ::::.:::::::::.::..:: : : . . : . :
NP_005 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYE
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB7 APTPDTQLDTEQPPRLPGSDPPAELHLSLSEQSASESAPEDQPDREEDPRAGAED--PKA
: . . : : . : : . .. .:.. . .:: : . : . :.:
NP_005 EVYPGYSYGNWPPKAL--APPLAAKTFPFAFNSVNVGPLASQP-VFSPPSSIAASMVPSA
150 160 170 180 190 200
210 220 230 240 250
pF1KB7 EKSPGADS-----KGLGCKRGSPKADSPGSLTITPVA-PGGGLLGPSHSYSSSPL-----
.::. .::: :.: . .:.... :. : .. . . . .:::
NP_005 AAAPGTVPGPGALQGLG---GGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDP
210 220 230 240 250
260 270 280 290 300 310
pF1KB7 ---SLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQ
:: :. . .:: . . :: :: :::
NP_005 CNSSLASLRLKAKQHASFSYPAVH-------GPPPAANLSPCQYAVERPV
260 270 280 290 300
320 330 340 350 360 370
pF1KB7 SYYQSLSAAAAAHQGVWGSPLLPAPPAGLAPASATLNSKTTSIENLRLRAKQHAASLGLD
>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob (284 aa)
initn: 323 init1: 292 opt: 324 Z-score: 219.9 bits: 49.0 E(85289): 1.6e-05
Smith-Waterman score: 334; 38.2% identity (61.8% similar) in 186 aa overlap (62-234:86-265)
40 50 60 70 80 90
pF1KB7 QHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYP
..::::: ::.::. ::. ::..: .::::
NP_005 NCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYP
60 70 80 90 100 110
100 110 120 130 140
pF1KB7 DVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQ-----KQKEAEGSHGEG
:. ::.::. .: ::::::::.::::::::..:. . . :. ::. : .
NP_005 DIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDD
120 130 140 150 160 170
150 160 170 180 190
pF1KB7 KAE----APTPDTQLDTEQPPRLPG-SDP---PAELHLSLSEQSASESAPEDQPDREEDP
.. .::::. . :: :: ..: :. : ..:. :. .: :: .
NP_005 DSKESTCSPTPDSTASLPPPPA-PGLASPRLSPSPLPVALG--SGPGPGPGPQPLKGAL-
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB7 RAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAPGGGLLGPSHSYSSSPLSL
::. . .::: . : : .: ..:: ..
NP_005 WAGVAGGGG-GGPGAGAAEL-LKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
240 250 260 270 280
260 270 280 290 300 310
pF1KB7 FRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQSYYQS
>>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa)
initn: 333 init1: 284 opt: 323 Z-score: 218.4 bits: 49.0 E(85289): 2e-05
Smith-Waterman score: 323; 38.2% identity (55.5% similar) in 220 aa overlap (40-244:131-339)
10 20 30 40 50 60
pF1KB7 SLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRS
:.: : :. : : . :. : :.::.
NP_006 ASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLH-LPLSPGLPDSMELAKNKS---KKRRN
110 120 130 140 150
70 80 90 100 110 120
pF1KB7 RTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQ
::.:.. ::: :::.::::::::: ::.::. :.: ::::::::.:::::.::..:
NP_006 RTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER---
160 170 180 190 200 210
130 140 150 160 170 180
pF1KB7 KEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRL---PGSDPPAELHLSLSEQSASES
: .:... . . : :. . : ::: :. : : :
NP_006 ---YGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPC
220 230 240 250 260 270
190 200 210 220 230
pF1KB7 -APEDQPDREEDPRAGAEDPKAEKSPGADS-KG----LGCKRGSPKAD----SPG--SLT
.: ..: :. :.: . :: : .: :: . :..: ::. ::
NP_006 MSPYSHPHGSVAGFMGVPAPSAAH-PGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLR
280 290 300 310 320
240 250 260 270 280 290
pF1KB7 ITPVAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHMAATNNLVHYSSFEVGGPAPAAAAAA
. : : : :
NP_006 VKPKEPPGLLNWTT
330 340
>>NP_878314 (OMIM: 142993,610092,610093) visual system h (361 aa)
initn: 310 init1: 289 opt: 323 Z-score: 218.1 bits: 49.0 E(85289): 2.1e-05
Smith-Waterman score: 323; 35.9% identity (64.7% similar) in 156 aa overlap (61-215:143-294)
40 50 60 70 80 90
pF1KB7 AQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHY
...::.:: :: ::. ::: :::.:...::
NP_878 GPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHY
120 130 140 150 160 170
100 110 120 130 140
pF1KB7 PDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEG-KAE
::: :: ::: :.::: :.::::.:::::.::... . ... . : .: .
NP_878 PDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEY---GLYGAMVRHS
180 190 200 210 220
150 160 170 180 190 200
pF1KB7 APTPDTQLDTEQPPRLPGSDPPAELHLSLSEQSASESAPEDQPDREEDPRAGAEDPKAEK
: :.. : . . . . : . : ..:.::. . . .:. :. . . :.
NP_878 IPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKME-QDER
230 240 250 260 270 280
210 220 230 240 250 260
pF1KB7 SPGADSKGLGCKRGSPKADSPGSLTITPVAPGGGLLGPSHSYSSSPLSLFRLQEQFRQHM
.: :..
NP_878 GPDAQAAISQEELRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRP
290 300 310 320 330 340
>>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa)
initn: 354 init1: 305 opt: 319 Z-score: 216.4 bits: 48.5 E(85289): 2.6e-05
Smith-Waterman score: 322; 31.0% identity (59.9% similar) in 197 aa overlap (61-255:93-277)
40 50 60 70 80 90
pF1KB7 AQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHY
...::::: ::.::. ::. ::..: .:::
NP_003 GSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHY
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 PDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKAEA
::. ::.::. .: ::::::::.::::::::..:. .. . :...... .
NP_003 PDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 PTPDTQLDTEQPPRLPGSDPPAELHLSLSEQSASESAPEDQPDREEDPRAGAEDPKAEKS
. ... . :: .: . . ... .: : :: : .
NP_003 ESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAP--------GAAGPG---G
190 200 210 220 230
220 230 240 250 260
pF1KB7 PGADSKGLGCKRGSPKADSPGSLTITPVAPGG--GLLGPSHSYSSSPLSLFRLQEQFRQH
::.. : : .. : . .. . . .: :: . ::..... .:
NP_003 PGGEP-GKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGP
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 MAATNNLVHYSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSLSAAAAAHQG
NP_003 FASVLSSLQRPNGAKAALVKSSMF
300 310
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:27:12 2016 done: Sat Nov 5 16:27:13 2016
Total Scan time: 10.780 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]