Result of FASTA (omim) for
pF1KB7944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7944, 246 aa
1>>>pF1KB7944 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9475+/-0.000304; mu= 5.0952+/- 0.019
mean_var=210.4999+/-41.855, 0's: 0 Z-trim(123.9): 11 B-trim: 50 in 1/55
Lambda= 0.088399
statistics sampled from 44436 (44447) to 44436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.521), width: 16
Scan time: 7.950
The best scores are: opt bits E(85289)
NP_005577 (OMIM: 604971) myoD family inhibitor iso ( 246) 1801 241.1 1.3e-63
NP_001287735 (OMIM: 604971) myoD family inhibitor ( 246) 1801 241.1 1.3e-63
NP_001287733 (OMIM: 604971) myoD family inhibitor ( 246) 1801 241.1 1.3e-63
XP_005249174 (OMIM: 604971) PREDICTED: myoD family ( 229) 1622 218.3 9.6e-57
XP_011512927 (OMIM: 604971) PREDICTED: myoD family ( 229) 1622 218.3 9.6e-57
XP_016866356 (OMIM: 604971) PREDICTED: myoD family ( 186) 1397 189.5 3.6e-48
NP_001287734 (OMIM: 604971) myoD family inhibitor ( 185) 1211 165.7 4.9e-41
XP_011512928 (OMIM: 604971) PREDICTED: myoD family ( 185) 1211 165.7 4.9e-41
NP_001159817 (OMIM: 614511) myoD family inhibitor ( 246) 611 89.4 6.5e-18
NP_951038 (OMIM: 614511) myoD family inhibitor dom ( 355) 611 89.5 8.5e-18
>>NP_005577 (OMIM: 604971) myoD family inhibitor isoform (246 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 1262.7 bits: 241.1 E(85289): 1.3e-63
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
190 200 210 220 230 240
pF1KB7 GLCFSS
::::::
NP_005 GLCFSS
>>NP_001287735 (OMIM: 604971) myoD family inhibitor isof (246 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 1262.7 bits: 241.1 E(85289): 1.3e-63
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
190 200 210 220 230 240
pF1KB7 GLCFSS
::::::
NP_001 GLCFSS
>>NP_001287733 (OMIM: 604971) myoD family inhibitor isof (246 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 1262.7 bits: 241.1 E(85289): 1.3e-63
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
190 200 210 220 230 240
pF1KB7 GLCFSS
::::::
NP_001 GLCFSS
>>XP_005249174 (OMIM: 604971) PREDICTED: myoD family inh (229 aa)
initn: 1614 init1: 1614 opt: 1622 Z-score: 1139.8 bits: 218.3 E(85289): 9.6e-57
Smith-Waterman score: 1622; 98.2% identity (98.2% similar) in 228 aa overlap (19-246:3-229)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
: : : :::::::::::::::::::::::::::::::::::
XP_005 MEPPAQPR-AQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
170 180 190 200 210 220
pF1KB7 GLCFSS
::::::
XP_005 GLCFSS
>>XP_011512927 (OMIM: 604971) PREDICTED: myoD family inh (229 aa)
initn: 1614 init1: 1614 opt: 1622 Z-score: 1139.8 bits: 218.3 E(85289): 9.6e-57
Smith-Waterman score: 1622; 98.2% identity (98.2% similar) in 228 aa overlap (19-246:3-229)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
: : : :::::::::::::::::::::::::::::::::::
XP_011 MEPPAQPR-AQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
170 180 190 200 210 220
pF1KB7 GLCFSS
::::::
XP_011 GLCFSS
>>XP_016866356 (OMIM: 604971) PREDICTED: myoD family inh (186 aa)
initn: 1397 init1: 1397 opt: 1397 Z-score: 985.8 bits: 189.5 E(85289): 3.6e-48
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 186 aa overlap (61-246:1-186)
40 50 60 70 80 90
pF1KB7 LLPGLEVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIPQGLDSTDLDVPTEAVTCQPQ
::::::::::::::::::::::::::::::
XP_016 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQ
10 20 30
100 110 120 130 140 150
pF1KB7 GNPLGCTPLLPNDSGHPSELGGTRRAGNGALGGPKAHRKLQTHPSLASQGSKKSKSSSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNPLGCTPLLPNDSGHPSELGGTRRAGNGALGGPKAHRKLQTHPSLASQGSKKSKSSSKS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 TTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECA
100 110 120 130 140 150
220 230 240
pF1KB7 DCDLPCDLDCGILDACCESADCLEICMECCGLCFSS
::::::::::::::::::::::::::::::::::::
XP_016 DCDLPCDLDCGILDACCESADCLEICMECCGLCFSS
160 170 180
>>NP_001287734 (OMIM: 604971) myoD family inhibitor isof (185 aa)
initn: 1204 init1: 1204 opt: 1211 Z-score: 857.7 bits: 165.7 E(85289): 4.9e-41
Smith-Waterman score: 1259; 74.8% identity (75.2% similar) in 246 aa overlap (1-246:1-185)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
:::::::::::::::::::::::::.:
NP_001 MYQVSGQRPSGCDAPYGAPSAAPGPGQ---------------------------------
10 20
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::
NP_001 ----------------------------PQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
30 40 50
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
120 130 140 150 160 170
pF1KB7 GLCFSS
::::::
NP_001 GLCFSS
180
>>XP_011512928 (OMIM: 604971) PREDICTED: myoD family inh (185 aa)
initn: 1204 init1: 1204 opt: 1211 Z-score: 857.7 bits: 165.7 E(85289): 4.9e-41
Smith-Waterman score: 1259; 74.8% identity (75.2% similar) in 246 aa overlap (1-246:1-185)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
:::::::::::::::::::::::::.:
XP_011 MYQVSGQRPSGCDAPYGAPSAAPGPGQ---------------------------------
10 20
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::
XP_011 ----------------------------PQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
30 40 50
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
120 130 140 150 160 170
pF1KB7 GLCFSS
::::::
XP_011 GLCFSS
180
>>NP_001159817 (OMIM: 614511) myoD family inhibitor doma (246 aa)
initn: 705 init1: 341 opt: 611 Z-score: 442.5 bits: 89.4 E(85289): 6.5e-18
Smith-Waterman score: 613; 43.4% identity (61.7% similar) in 256 aa overlap (17-246:3-246)
10 20 30 40 50
pF1KB7 MYQVSGQRPSGCDAPYGAPSA-APGPA--QTLSLLPGLEVVTGSTHPAEAAPEEGSLEEA
:: : ::::. : .. : .. ::: :.. .. . :.
NP_001 MSGAGEALAPGPVGPQRVAEAGGGQL--GST--AQGKCDKDNTEKD
10 20 30 40
60 70 80 90 100
pF1KB7 ATPMPQGNGPGIPQG--LDSTDLDVPT--EAVTCQPQGNP-LGCTPLLPND-------SG
: :... . .: :.. :. : . ::: : : . .:. .:
NP_001 IT---QATNSHFTHGEMQDQSIWGNPSDGELIRTQPQRLPQLQTSAQVPSGEEIGKIKNG
50 60 70 80 90
110 120 130 140 150
pF1KB7 HPSELGGTR--------RAGNGALGGP---KAHRKLQTHPSLASQGSKKSKSSSKSTTSQ
: . .:. : : :..: : :::.:. :. :. ::::: .. . ::
NP_001 HTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHRKIQSSLSVNSDISKKSKVNA--VFSQ
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB7 IPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDL
.. :::::::::.:::::::::::::: :.:: :.:: ::::::. ::.
NP_001 KTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCGDEMGDDCNC
160 170 180 190 200 210
220 230 240
pF1KB7 PCDLDCGILDACCESADCLEICMECCGLCFSS
:::.::::.::::::.:::::::::::.:: :
NP_001 PCDMDCGIMDACCESSDCLEICMECCGICFPS
220 230 240
>>NP_951038 (OMIM: 614511) myoD family inhibitor domain- (355 aa)
initn: 705 init1: 341 opt: 611 Z-score: 440.5 bits: 89.5 E(85289): 8.5e-18
Smith-Waterman score: 615; 42.5% identity (61.2% similar) in 268 aa overlap (5-246:105-355)
10 20 30
pF1KB7 MYQVSGQRPSGCDAPYGAPSA-APGPA--QTLSL
:..:: . :: : ::::. : ..
NP_951 AVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMS-----GAGEALAPGPVGPQRVAE
80 90 100 110 120
40 50 60 70 80
pF1KB7 LPGLEVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIPQG--LDSTDLDVPT--EAVTC
: .. ::: :.. .. . :. : :... . .: :.. :. : .
NP_951 AGGGQL--GST--AQGKCDKDNTEKDIT---QATNSHFTHGEMQDQSIWGNPSDGELIRT
130 140 150 160 170 180
90 100 110 120
pF1KB7 QPQGNP-LGCTPLLPND-------SGHPSELGGTR--------RAGNGALGGP---KAHR
::: : : . .:. .:: . .:. : : :..: : ::
NP_951 QPQRLPQLQTSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHR
190 200 210 220 230 240
130 140 150 160 170 180
pF1KB7 KLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCAT
:.:. :. :. ::::: . .. :: .. :::::::::.:::::::::::::: :.
NP_951 KIQSSLSVNSDISKKSKVN--AVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQAS
250 260 270 280 290 300
190 200 210 220 230 240
pF1KB7 CGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS
:: :.:: ::::::. ::. :::.::::.::::::.:::::::::::.:: :
NP_951 CGICTSEA---CCCCCGDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS
310 320 330 340 350
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:42:42 2016 done: Sat Nov 5 14:42:43 2016
Total Scan time: 7.950 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]