Result of FASTA (omim) for
pF1KB7945
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7945, 391 aa
1>>>pF1KB7945 391 - 391 aa - 391 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1236+/-0.000349; mu= 0.2625+/- 0.022
mean_var=226.2407+/-46.467, 0's: 0 Z-trim(120.7): 68 B-trim: 37 in 1/60
Lambda= 0.085269
statistics sampled from 36305 (36374) to 36305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.426), width: 16
Scan time: 7.840
The best scores are: opt bits E(85289)
NP_057953 (OMIM: 167414,615545) paired box protein ( 391) 2631 336.2 8.1e-92
XP_005251538 (OMIM: 167414,615545) PREDICTED: pair ( 390) 2527 323.4 5.7e-88
NP_001267477 (OMIM: 167414,615545) paired box prot ( 362) 2261 290.7 3.8e-78
NP_001267476 (OMIM: 167414,615545) paired box prot ( 357) 2027 261.9 1.7e-69
NP_001267481 (OMIM: 167414,615545) paired box prot ( 328) 2017 260.6 3.8e-69
NP_001267485 (OMIM: 167414,615545) paired box prot ( 283) 1899 246.1 8e-65
NP_000269 (OMIM: 120330,167409,191830,616002) pair ( 394) 1855 240.8 4.4e-63
NP_001291498 (OMIM: 120330,167409,191830,616002) p ( 425) 1855 240.8 4.7e-63
XP_016871777 (OMIM: 120330,167409,191830,616002) P ( 424) 1848 239.9 8.5e-63
XP_011516198 (OMIM: 167414,615545) PREDICTED: pair ( 410) 1752 228.1 3e-59
NP_001267478 (OMIM: 167414,615545) paired box prot ( 324) 1735 225.9 1.1e-58
NP_001267479 (OMIM: 167414,615545) paired box prot ( 295) 1728 225.0 1.8e-58
NP_003980 (OMIM: 120330,167409,191830,616002) pair ( 409) 1728 225.1 2.3e-58
XP_016871775 (OMIM: 120330,167409,191830,616002) P ( 440) 1728 225.2 2.4e-58
XP_011516199 (OMIM: 167414,615545) PREDICTED: pair ( 409) 1648 215.3 2.1e-55
NP_003979 (OMIM: 120330,167409,191830,616002) pair ( 396) 1546 202.7 1.2e-51
XP_016871776 (OMIM: 120330,167409,191830,616002) P ( 427) 1546 202.8 1.3e-51
XP_011510096 (OMIM: 167415,218700) PREDICTED: pair ( 387) 1536 201.5 2.8e-51
XP_011510095 (OMIM: 167415,218700) PREDICTED: pair ( 444) 1524 200.1 8.8e-51
NP_001267483 (OMIM: 167414,615545) paired box prot ( 348) 1310 173.7 6.1e-43
NP_001267480 (OMIM: 167414,615545) paired box prot ( 220) 1285 170.4 3.6e-42
NP_039246 (OMIM: 167415,218700) paired box protein ( 398) 1174 157.0 7.4e-38
XP_016860368 (OMIM: 167415,218700) PREDICTED: pair ( 402) 1169 156.4 1.1e-37
XP_011510094 (OMIM: 167415,218700) PREDICTED: pair ( 455) 1162 155.5 2.3e-37
XP_016860367 (OMIM: 167415,218700) PREDICTED: pair ( 459) 1157 154.9 3.5e-37
NP_003457 (OMIM: 167415,218700) paired box protein ( 450) 1138 152.6 1.7e-36
XP_011510093 (OMIM: 167415,218700) PREDICTED: pair ( 500) 1126 151.1 5.3e-36
XP_011510092 (OMIM: 167415,218700) PREDICTED: pair ( 507) 1126 151.2 5.3e-36
NP_001267484 (OMIM: 167414,615545) paired box prot ( 291) 1109 148.9 1.5e-35
NP_054698 (OMIM: 167415,218700) paired box protein ( 287) 1105 148.4 2.1e-35
NP_039247 (OMIM: 167415,218700) paired box protein ( 321) 1100 147.8 3.4e-35
NP_001267482 (OMIM: 167414,615545) paired box prot ( 319) 1069 144.0 4.8e-34
NP_003978 (OMIM: 120330,167409,191830,616002) pair ( 417) 1020 138.1 3.9e-32
XP_016871774 (OMIM: 120330,167409,191830,616002) P ( 448) 1020 138.1 4.1e-32
NP_003981 (OMIM: 120330,167409,191830,616002) pair ( 432) 1016 137.6 5.6e-32
XP_016871773 (OMIM: 120330,167409,191830,616002) P ( 463) 1016 137.6 5.9e-32
XP_016871778 (OMIM: 120330,167409,191830,616002) P ( 374) 820 113.4 9e-25
XP_016871772 (OMIM: 120330,167409,191830,616002) P ( 483) 820 113.5 1.1e-24
XP_016871771 (OMIM: 120330,167409,191830,616002) P ( 483) 820 113.5 1.1e-24
XP_016871770 (OMIM: 120330,167409,191830,616002) P ( 496) 820 113.5 1.1e-24
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 755 105.4 2.4e-22
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 755 105.5 2.5e-22
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 755 105.5 2.5e-22
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 755 105.5 2.5e-22
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 755 105.5 2.5e-22
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 694 98.0 5.1e-20
NP_006183 (OMIM: 167411,615560) paired box protein ( 534) 692 97.8 6.5e-20
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 682 96.5 1.2e-19
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 682 96.5 1.2e-19
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 682 96.5 1.4e-19
>>NP_057953 (OMIM: 167414,615545) paired box protein Pax (391 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 1769.4 bits: 336.2 E(85289): 8.1e-92
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
310 320 330 340 350 360
370 380 390
pF1KB7 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
:::::::::::::::::::::::::::::::
NP_057 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
370 380 390
>>XP_005251538 (OMIM: 167414,615545) PREDICTED: paired b (390 aa)
initn: 2522 init1: 2522 opt: 2527 Z-score: 1700.3 bits: 323.4 E(85289): 5.7e-88
Smith-Waterman score: 2527; 98.7% identity (99.0% similar) in 382 aa overlap (10-391:9-390)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
: .: ::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEIHCKHDPFASMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
300 310 320 330 340 350
370 380 390
pF1KB7 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
:::::::::::::::::::::::::::::::
XP_005 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
360 370 380 390
>>NP_001267477 (OMIM: 167414,615545) paired box protein (362 aa)
initn: 2290 init1: 2261 opt: 2261 Z-score: 1523.9 bits: 290.7 E(85289): 3.8e-78
Smith-Waterman score: 2347; 92.6% identity (92.6% similar) in 391 aa overlap (1-391:1-362)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
:::::::::::::::::::::::::::::::::::::::
NP_001 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGS---------------------
310 320 330
370 380 390
pF1KB7 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
:::::::::::::::::::::::
NP_001 --------PYYYSAAARGAAPPAAATAYDRH
340 350 360
>>NP_001267476 (OMIM: 167414,615545) paired box protein (357 aa)
initn: 2078 init1: 2018 opt: 2027 Z-score: 1368.4 bits: 261.9 E(85289): 1.7e-69
Smith-Waterman score: 2313; 91.3% identity (91.3% similar) in 391 aa overlap (1-391:1-357)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
:::: ::::::::::::::::::::::
NP_001 IVTG----------------------------------SEFSGSPYSHPQYSSYNDSWRF
310 320
370 380 390
pF1KB7 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
:::::::::::::::::::::::::::::::
NP_001 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
330 340 350
>>NP_001267481 (OMIM: 167414,615545) paired box protein (328 aa)
initn: 2042 init1: 2013 opt: 2017 Z-score: 1362.3 bits: 260.6 E(85289): 3.8e-69
Smith-Waterman score: 2039; 83.9% identity (83.9% similar) in 391 aa overlap (1-391:1-328)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRF
::::
NP_001 IVTG--------------------------------------------------------
370 380 390
pF1KB7 PNPGLLGSPYYYSAAARGAAPPAAATAYDRH
::::::::::::::::::::::::
NP_001 -------SPYYYSAAARGAAPPAAATAYDRH
310 320
>>NP_001267485 (OMIM: 167414,615545) paired box protein (283 aa)
initn: 1899 init1: 1899 opt: 1899 Z-score: 1284.8 bits: 246.1 E(85289): 8e-65
Smith-Waterman score: 1899; 100.0% identity (100.0% similar) in 283 aa overlap (109-391:1-283)
80 90 100 110 120 130
pF1KB7 KPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRI
::::::::::::::::::::::::::::::
NP_001 MFAWEIRDRLLAERVCDNDTVPSVSSINRI
10 20 30
140 150 160 170 180 190
pF1KB7 IRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSADTNKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSADTNKRK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 RDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKP
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB7 EQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPH
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB7 VPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARG
220 230 240 250 260 270
380 390
pF1KB7 AAPPAAATAYDRH
:::::::::::::
NP_001 AAPPAAATAYDRH
280
>>NP_000269 (OMIM: 120330,167409,191830,616002) paired b (394 aa)
initn: 1563 init1: 883 opt: 1855 Z-score: 1253.5 bits: 240.8 E(85289): 4.4e-63
Smith-Waterman score: 1855; 70.7% identity (85.2% similar) in 399 aa overlap (1-391:1-394)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::.. . . . :::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
NP_000 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVST
: .::::::::::::::::::::::: . :.: : .:.:: . . :::.:.
NP_000 EGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASN
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 DSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQ
: .:: :::.::::: : .. .:::::: ..:. :::: : : : :::..:.: ::::
NP_000 DPVGS-YSINGILGI--PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 QLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSS
:::.::::::: : :.: ..: :: :: .::: . .:. :::..:..:.. : ..::.
NP_000 QLEALDRVFERPSYPDVFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 VPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYS
: : :.::.:::::.::::::::::::::.::::: . ::.::::::::::.:::::::.
NP_000 VSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT
300 310 320 330 340 350
360 370 380 390
pF1KB7 SYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
.::..::: ::.::.:::::::: ::.:: :::.:::::
NP_000 AYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
360 370 380 390
>>NP_001291498 (OMIM: 120330,167409,191830,616002) paire (425 aa)
initn: 1563 init1: 883 opt: 1855 Z-score: 1253.0 bits: 240.8 E(85289): 4.7e-63
Smith-Waterman score: 1855; 70.7% identity (85.2% similar) in 399 aa overlap (1-391:32-425)
10 20 30
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNG
::.. . . . :::::::::::::::
NP_001 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 ATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQPPNQP
::::::.:::::::::::::::::::::::: .::::::::::::::::::::::: . :
NP_001 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFH-P
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 VP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSADTNKRKRDEG
.: : .:.:: . . :::.:.: .:: :::.::::: : .. .::::::
NP_001 TPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YSINGILGI--PRSNGEKRKRDED
190 200 210 220 230
210 220 230 240 250 260
pF1KB7 IQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTT
..:. :::: : : : :::..:.: :::::::.::::::: : :.: ..: :: :: .
NP_001 VSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGN
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 EYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPA
::: . .:. :::..:..:.. : ..::.: : :.::.:::::.::::::::::::::.
NP_001 EYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPT
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB7 GQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPP
::::: . ::.::::::::::.:::::::..::..::: ::.::.:::::::: ::.::
NP_001 GQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPA
360 370 380 390 400 410
390
pF1KB7 AAATAYDRH
:::.:::::
NP_001 AAAAAYDRH
420
>>XP_016871777 (OMIM: 120330,167409,191830,616002) PREDI (424 aa)
initn: 1552 init1: 872 opt: 1848 Z-score: 1248.4 bits: 239.9 E(85289): 8.5e-63
Smith-Waterman score: 1848; 70.7% identity (85.2% similar) in 399 aa overlap (1-391:32-424)
10 20 30
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNG
::.. . : .. ::::::::::::::
XP_016 EERAGPAVLKLSLRGDTAAAAALLPLLCLPMDMHCK-ADPFSAMHRHGGVNQLGGVFVNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 ATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQPPNQP
::::::.:::::::::::::::::::::::: .::::::::::::::::::::::: . :
XP_016 ATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKVQQPFH-P
130 140 150 160 170
160 170 180 190 200
pF1KB7 VP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSADTNKRKRDEG
.: : .:.:: . . :::.:.: .:: :::.::::: : .. .::::::
XP_016 TPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YSINGILGI--PRSNGEKRKRDED
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 IQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSDIFTTTEPIKPEQTT
..:. :::: : : : :::..:.: :::::::.::::::: : :.: ..: :: :: .
XP_016 VSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGN
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 EYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPA
::: . .:. :::..:..:.. : ..::.: : :.::.:::::.::::::::::::::.
XP_016 EYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPT
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB7 GQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPP
::::: . ::.::::::::::.:::::::..::..::: ::.::.:::::::: ::.::
XP_016 GQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPRGSAPA
360 370 380 390 400 410
390
pF1KB7 AAATAYDRH
:::.:::::
XP_016 AAAAAYDRH
420
>>XP_011516198 (OMIM: 167414,615545) PREDICTED: paired b (410 aa)
initn: 1794 init1: 1728 opt: 1752 Z-score: 1184.8 bits: 228.1 E(85289): 3e-59
Smith-Waterman score: 2583; 95.4% identity (95.4% similar) in 410 aa overlap (1-391:1-410)
10 20 30 40 50 60
pF1KB7 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLEKNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRV
190 200 210 220 230 240
250 260 270 280
pF1KB7 FERQHYSDIFTTTEPIKPEQ-------------------TTEYSAMASLAGGLDDMKANL
:::::::::::::::::::: :::::::::::::::::::::
XP_011 FERQHYSDIFTTTEPIKPEQWCPVLMRQYLVQPQAVLFQTTEYSAMASLAGGLDDMKANL
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 ASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASPTPADIGSSVPGPQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEF
310 320 330 340 350 360
350 360 370 380 390
pF1KB7 SGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSPYSHPQYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
370 380 390 400 410
391 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:23:07 2016 done: Sat Nov 5 08:23:08 2016
Total Scan time: 7.840 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]