Result of FASTA (omim) for
pF1KB7948
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7948, 375 aa
1>>>pF1KB7948 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1543+/-0.000376; mu= 17.2424+/- 0.024
mean_var=235.3791+/-52.656, 0's: 0 Z-trim(119.7): 406 B-trim: 1783 in 1/57
Lambda= 0.083597
statistics sampled from 33520 (34068) to 33520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.399), width: 16
Scan time: 8.730
The best scores are: opt bits E(85289)
NP_003243 (OMIM: 603413) nucleolysin TIAR isoform ( 375) 2624 329.2 9.2e-90
NP_001310898 (OMIM: 603413) nucleolysin TIAR isofo ( 336) 2359 297.2 3.7e-80
NP_001310899 (OMIM: 603413) nucleolysin TIAR isofo ( 353) 2341 295.1 1.7e-79
NP_001029097 (OMIM: 603413) nucleolysin TIAR isofo ( 392) 2341 295.1 1.8e-79
NP_001310897 (OMIM: 603413) nucleolysin TIAR isofo ( 360) 2311 291.5 2.1e-78
XP_005264584 (OMIM: 603518,604454) PREDICTED: nucl ( 374) 2043 259.2 1.1e-68
NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1 ( 375) 2041 258.9 1.4e-68
XP_016860279 (OMIM: 603518,604454) PREDICTED: nucl ( 338) 1829 233.3 6.4e-61
NP_001310896 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1794 228.9 1e-59
NP_001310893 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1794 228.9 1e-59
XP_016872095 (OMIM: 603413) PREDICTED: nucleolysin ( 252) 1794 228.9 1e-59
NP_001310894 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1794 228.9 1e-59
XP_016860280 (OMIM: 603518,604454) PREDICTED: nucl ( 310) 1686 216.0 9.5e-56
XP_011531379 (OMIM: 603518,604454) PREDICTED: nucl ( 385) 1518 195.9 1.3e-49
XP_005264585 (OMIM: 603518,604454) PREDICTED: nucl ( 321) 1516 195.5 1.4e-49
XP_016860278 (OMIM: 603518,604454) PREDICTED: nucl ( 349) 1516 195.6 1.5e-49
NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1 ( 386) 1516 195.6 1.6e-49
XP_005264588 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 1508 194.5 2.6e-49
XP_016860284 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 1508 194.5 2.6e-49
XP_016860283 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_016860282 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_016860281 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_011531383 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_011531384 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_011531380 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1320 171.8 1.8e-42
XP_016860287 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1276 166.4 6.5e-41
XP_016860286 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1276 166.4 6.5e-41
XP_016860285 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1276 166.4 6.5e-41
XP_016860288 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1276 166.4 6.5e-41
XP_016860289 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1276 166.4 6.5e-41
NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631) 441 66.3 2.2e-10
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens] ( 710) 261 44.7 0.00079
XP_016881347 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 247 42.7 0.002
XP_016871044 (OMIM: 602538) PREDICTED: CUGBP Elav- ( 356) 241 41.8 0.003
XP_016872614 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872613 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872618 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872619 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872615 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872621 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
NP_001020767 (OMIM: 601074) CUGBP Elav-like family ( 486) 235 41.3 0.0057
XP_016872620 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872617 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872616 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 235 41.3 0.0057
XP_016872604 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
XP_011518158 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
XP_016872609 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
XP_011518157 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
XP_011518159 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
XP_011518160 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 235 41.3 0.0057
>>NP_003243 (OMIM: 603413) nucleolysin TIAR isoform 1 [H (375 aa)
initn: 2624 init1: 2624 opt: 2624 Z-score: 1732.5 bits: 329.2 E(85289): 9.2e-90
Smith-Waterman score: 2624; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIP
310 320 330 340 350 360
370
pF1KB7 PPNQAGYGMASYQTQ
:::::::::::::::
NP_003 PPNQAGYGMASYQTQ
370
>>NP_001310898 (OMIM: 603413) nucleolysin TIAR isoform 5 (336 aa)
initn: 2359 init1: 2359 opt: 2359 Z-score: 1560.2 bits: 297.2 E(85289): 3.7e-80
Smith-Waterman score: 2359; 100.0% identity (100.0% similar) in 336 aa overlap (40-375:1-336)
10 20 30 40 50 60
pF1KB7 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN
::::::::::::::::::::::::::::::
NP_001 MITEHTSNDPYCFVEFYEHRDAAAALAAMN
10 20 30
70 80 90 100 110 120
pF1KB7 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 KDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 HESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 MANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGM
280 290 300 310 320 330
370
pF1KB7 ASYQTQ
::::::
NP_001 ASYQTQ
>>NP_001310899 (OMIM: 603413) nucleolysin TIAR isoform 6 (353 aa)
initn: 2341 init1: 2341 opt: 2341 Z-score: 1548.3 bits: 295.1 E(85289): 1.7e-79
Smith-Waterman score: 2341; 99.1% identity (99.7% similar) in 335 aa overlap (41-375:19-353)
20 30 40 50 60 70
pF1KB7 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG
. .:::::::::::::::::::::::::::
NP_001 MITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNG
10 20 30 40
80 90 100 110 120 130
pF1KB7 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB7 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB7 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTH
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 ESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYM
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB7 ANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMA
290 300 310 320 330 340
pF1KB7 SYQTQ
:::::
NP_001 SYQTQ
350
>>NP_001029097 (OMIM: 603413) nucleolysin TIAR isoform 2 (392 aa)
initn: 2341 init1: 2341 opt: 2341 Z-score: 1547.8 bits: 295.1 E(85289): 1.8e-79
Smith-Waterman score: 2580; 95.7% identity (95.7% similar) in 392 aa overlap (1-375:1-392)
10 20 30 40
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-----------------
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
310 320 330 340 350 360
350 360 370
pF1KB7 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
::::::::::::::::::::::::::::::::
NP_001 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
370 380 390
>>NP_001310897 (OMIM: 603413) nucleolysin TIAR isoform 4 (360 aa)
initn: 2321 init1: 2028 opt: 2311 Z-score: 1528.6 bits: 291.5 E(85289): 2.1e-78
Smith-Waterman score: 2311; 96.8% identity (97.7% similar) in 342 aa overlap (41-375:19-360)
20 30 40 50 60 70
pF1KB7 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG
. .:::::::::::::::::::::::::::
NP_001 MITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNG
10 20 30 40
80 90 100 110 120 130
pF1KB7 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB7 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB7 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTH
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 ESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYM
230 240 250 260 270 280
320 330 340 350 360
pF1KB7 ANGWQVPPYGVYGQPWNQQGFGVD-------QSPSAAWMGGFGAQPPQGQAPPPVIPPPN
:::::::::::::::::::::::. :::::::::::::::::::::::::::::
NP_001 ANGWQVPPYGVYGQPWNQQGFGVEFFLFLPSQSPSAAWMGGFGAQPPQGQAPPPVIPPPN
290 300 310 320 330 340
370
pF1KB7 QAGYGMASYQTQ
::::::::::::
NP_001 QAGYGMASYQTQ
350 360
>>XP_005264584 (OMIM: 603518,604454) PREDICTED: nucleoly (374 aa)
initn: 1977 init1: 1690 opt: 2043 Z-score: 1353.8 bits: 259.2 E(85289): 1.1e-68
Smith-Waterman score: 2043; 79.7% identity (90.2% similar) in 379 aa overlap (2-375:1-374)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
:::. .:.:::::::::::::.:::::::::::::.:::: . ..:::::::::.:::
XP_005 MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRH
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
:::::::::::::.::::::::::::::::::::::::::::::::::::::::.:::::
XP_005 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
:.:::::::::::::::::::::::.:: :::::: .:::::::::::::::::::::::
XP_005 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
::: :.::::: ...:::::::.::::::::..::::.::::::::::::::::::::.:
XP_005 KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ--VDYSQ-WGQWS
:::::::..::::::::::::::::::::::::::::. :: . :: . : : .:::.
XP_005 GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQNQIGYPQPYGQWG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 QVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-GFGAQPPQGQAPP
: ::: :: :::: :::::: ::.::: ::::::. :: :: ::: ..:.::::::
XP_005 QWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPNYGVQPPQGQNGS
300 310 320 330 340 350
360 370
pF1KB7 PVIPPPNQ-AGYGMASYQTQ
. ::: .:: .:.:.::
XP_005 ML---PNQPSGYRVAGYETQ
360 370
>>NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1 isof (375 aa)
initn: 1977 init1: 1690 opt: 2041 Z-score: 1352.5 bits: 258.9 E(85289): 1.4e-68
Smith-Waterman score: 2041; 79.5% identity (90.0% similar) in 380 aa overlap (2-375:1-375)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
:::. .:.:::::::::::::.:::::::::::::.:::: . ..:::::::::.:::
NP_071 MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRH
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
:::::::::::::.::::::::::::::::::::::::::::::::::::::::.:::::
NP_071 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
:.:::::::::::::::::::::::.:: :::::: .:::::::::::::::::::::::
NP_071 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
::: :.::::: ...:::::::.::::::::..::::.::::::::::::::::::::.:
NP_071 KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ---VDYSQ-WGQW
:::::::..::::::::::::::::::::::::::::. :: . :: . : : .:::
NP_071 GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQW
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 SQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-GFGAQPPQGQAP
.: ::: :: :::: :::::: ::.::: ::::::. :: :: ::: ..:.::::::
NP_071 GQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPNYGVQPPQGQNG
300 310 320 330 340 350
360 370
pF1KB7 PPVIPPPNQ-AGYGMASYQTQ
. ::: .:: .:.:.::
NP_071 SML---PNQPSGYRVAGYETQ
360 370
>>XP_016860279 (OMIM: 603518,604454) PREDICTED: nucleoly (338 aa)
initn: 1769 init1: 1482 opt: 1829 Z-score: 1214.7 bits: 233.3 E(85289): 6.4e-61
Smith-Waterman score: 1829; 78.9% identity (89.2% similar) in 342 aa overlap (40-375:1-338)
10 20 30 40 50 60
pF1KB7 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN
:: . ..:::::::::.::: :::::::::
XP_016 MIMDTAGNDPYCFVEFHEHRHAAAALAAMN
10 20 30
70 80 90 100 110 120
pF1KB7 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV
::::.::::::::::::::::::::::::::::::::::::::::.::::::.:::::::
XP_016 GRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 KDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK
::::::::::::::::.:: :::::: .:::::::::::::::::::::::::: :.:::
XP_016 KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST
:: ...:::::::.::::::::..::::.::::::::::::::::::::.::::::::..
XP_016 QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 HESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ---VDYSQ-WGQWSQVYGNPQQ
::::::::::::::::::::::::::::. :: . :: . : : .:::.: ::: ::
XP_016 HESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQ
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 YGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-GFGAQPPQGQAPPPVIPPPNQ
:::: :::::: ::.::: ::::::. :: :: ::: ..:.:::::: . :::
XP_016 IGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPNYGVQPPQGQNGSML---PNQ
280 290 300 310 320
370
pF1KB7 -AGYGMASYQTQ
.:: .:.:.::
XP_016 PSGYRVAGYETQ
330
>>NP_001310896 (OMIM: 603413) nucleolysin TIAR isoform 3 (252 aa)
initn: 1794 init1: 1794 opt: 1794 Z-score: 1193.1 bits: 228.9 E(85289): 1e-59
Smith-Waterman score: 1794; 100.0% identity (100.0% similar) in 251 aa overlap (125-375:2-252)
100 110 120 130 140 150
pF1KB7 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA
::::::::::::::::::::::::::::::
NP_001 MDARVVKDMATGKSKGYGFVSFYNKLDAENA
10 20 30
160 170 180 190 200 210
pF1KB7 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB7 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB7 GKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVD
160 170 180 190 200 210
340 350 360 370
pF1KB7 QSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
:::::::::::::::::::::::::::::::::::::::::
NP_001 QSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
220 230 240 250
>>NP_001310893 (OMIM: 603413) nucleolysin TIAR isoform 3 (252 aa)
initn: 1794 init1: 1794 opt: 1794 Z-score: 1193.1 bits: 228.9 E(85289): 1e-59
Smith-Waterman score: 1794; 100.0% identity (100.0% similar) in 251 aa overlap (125-375:2-252)
100 110 120 130 140 150
pF1KB7 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA
::::::::::::::::::::::::::::::
NP_001 MDARVVKDMATGKSKGYGFVSFYNKLDAENA
10 20 30
160 170 180 190 200 210
pF1KB7 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB7 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB7 GKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVD
160 170 180 190 200 210
340 350 360 370
pF1KB7 QSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
:::::::::::::::::::::::::::::::::::::::::
NP_001 QSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
220 230 240 250
375 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:14:36 2016 done: Sat Nov 5 10:14:37 2016
Total Scan time: 8.730 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]