FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7955, 256 aa
  1>>>pF1KB7955 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7891+/-0.000748; mu= 17.3360+/- 0.045
 mean_var=58.0017+/-11.364, 0's: 0 Z-trim(107.5): 12  B-trim: 0 in 0/51
 Lambda= 0.168405
 statistics sampled from 9641 (9647) to 9641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.296), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10         ( 256) 1701 421.2 3.4e-118
CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX         ( 271)  911 229.3 2.2e-60
CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19         ( 198)  881 221.9 2.6e-58
CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1            ( 199)  876 220.7 6.1e-58


>>CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10              (256 aa)
 initn: 1701 init1: 1701 opt: 1701  Z-score: 2235.3  bits: 421.2 E(32554): 3.4e-118
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KB7 MAAAVGRLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQAKLFSTSSSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAAAVGRLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQAKLFSTSSSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKAN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTI
              190       200       210       220       230       240

              250      
pF1KB7 KPSPAASKEYFQKVNQ
       ::::::::::::::::
CCDS76 KPSPAASKEYFQKVNQ
              250      

>>CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX              (271 aa)
 initn: 924 init1: 905 opt: 911  Z-score: 1197.7  bits: 229.3 E(32554): 2.2e-60
Smith-Waterman score: 911; 66.5% identity (90.6% similar) in 191 aa overlap (65-255:81-271)

           40        50        60        70        80        90    
pF1KB7 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKY
                                     ... :::..::::..::::.:.: :..:::
CCDS14 CHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKY
               60        70        80        90       100       110

          100       110       120       130       140       150    
pF1KB7 LVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLG
       ::.:::::::::::::::.::.:. .::...: :::: ::::.:.:::::::::..::::
CCDS14 LVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG
              120       130       140       150       160       170

          160       170       180       190       200       210    
pF1KB7 HMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR
        . : ::::::.:::.:::: :: :: .:::::::: .:.......:::::::::.::::
CCDS14 PIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLR
              180       190       200       210       220       230

          220       230       240       250      
pF1KB7 LVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
       ::.::::.. :::::::.: : : :: :.::.. .::.:.: 
CCDS14 LVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN 
              240       250       260       270  

>>CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19              (198 aa)
 initn: 879 init1: 879 opt: 881  Z-score: 1160.3  bits: 221.9 E(32554): 2.6e-58
Smith-Waterman score: 881; 65.4% identity (89.0% similar) in 191 aa overlap (65-255:8-198)

           40        50        60        70        80        90    
pF1KB7 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKY
                                     . . :: ::.::::.: ::...:.:.::::
CCDS12                        MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKY
                                      10        20        30       

          100       110       120       130       140       150    
pF1KB7 LVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLG
       .:::::::::::::::::.:::..:..:. ..:::..:::::.:.::::::::::.::::
CCDS12 VVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLG
        40        50        60        70        80        90       

          160       170       180       190       200       210    
pF1KB7 HMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR
        .:: ::.:.:...:.:::::    :.: ::::::: .::.....::::::::::.:.::
CCDS12 PLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALR
       100       110       120       130       140       150       

          220       230       240       250      
pF1KB7 LVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
       ::.::::.. :::::::.: : : ::::.   :::::.: : 
CCDS12 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN 
       160       170       180       190         

>>CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1                 (199 aa)
 initn: 862 init1: 832 opt: 876  Z-score: 1153.7  bits: 220.7 E(32554): 6.1e-58
Smith-Waterman score: 876; 64.2% identity (87.9% similar) in 190 aa overlap (65-253:8-197)

           40        50        60        70         80        90   
pF1KB7 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVV-NGEFKDLSLDDFKGK
                                     . . :: ::.:::. .:.:::.::.:.:::
CCDS52                        MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGK
                                      10        20        30       

           100       110       120       130       140       150   
pF1KB7 YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL
       :.:.:::::::::::::::.::::.:.::. .::.:...:::::: ::::.:::.:.:::
CCDS52 YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGL
        40        50        60        70        80        90       

           160       170       180       190       200       210   
pF1KB7 GHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETL
       : ::: :.::  . :..:::::    :...::::::: .:......::::::::::.:::
CCDS52 GPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETL
       100       110       120       130       140       150       

           220       230       240       250      
pF1KB7 RLVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
       :::.:::... :::::::.: : : ::::.   :::::.:   
CCDS52 RLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK 
       160       170       180       190          




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:16:32 2016 done: Sat Nov  5 10:16:33 2016
 Total Scan time:  2.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]