FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7958, 396 aa
  1>>>pF1KB7958 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5954+/-0.00115; mu= 9.7911+/- 0.067
 mean_var=110.0314+/-23.683, 0's: 0 Z-trim(105.0): 124  B-trim: 143 in 1/49
 Lambda= 0.122269
 statistics sampled from 8034 (8179) to 8034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS3978.1 ERCC8 gene_id:1161|Hs108|chr5           ( 396) 2691 486.1 2.4e-137


>>CCDS3978.1 ERCC8 gene_id:1161|Hs108|chr5                (396 aa)
 initn: 2691 init1: 2691 opt: 2691  Z-score: 2579.2  bits: 486.1 E(32554): 2.4e-137
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB7 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
              310       320       330       340       350       360

              370       380       390      
pF1KB7 WVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
       ::::::::::::::::::::::::::::::::::::
CCDS39 WVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
              370       380       390      




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:45:31 2016 done: Sat Nov  5 14:45:32 2016
 Total Scan time:  2.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]