Result of FASTA (omim) for
pF1KB7958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7958, 396 aa
1>>>pF1KB7958 396 - 396 aa - 396 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7591+/-0.000444; mu= 14.5612+/- 0.027
mean_var=119.1035+/-25.680, 0's: 0 Z-trim(111.6): 229 B-trim: 494 in 1/53
Lambda= 0.117520
statistics sampled from 19910 (20219) to 19910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.237), width: 16
Scan time: 8.230
The best scores are: opt bits E(85289)
NP_000073 (OMIM: 216400,609412,614621) DNA excisio ( 396) 2691 468.1 1.6e-131
NP_001007234 (OMIM: 216400,609412,614621) DNA exci ( 338) 2314 404.1 2.6e-112
NP_001277214 (OMIM: 216400,609412,614621) DNA exci ( 243) 1617 285.8 7.7e-77
NP_001007235 (OMIM: 216400,609412,614621) DNA exci ( 205) 1246 222.8 5.9e-58
NP_056441 (OMIM: 610091) WD repeat and SOCS box-co ( 421) 237 52.1 3e-06
NP_599027 (OMIM: 610091) WD repeat and SOCS box-co ( 275) 229 50.5 5.8e-06
XP_016879922 (OMIM: 610091) PREDICTED: WD repeat a ( 383) 212 47.8 5.3e-05
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 207 46.8 7.7e-05
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 207 46.8 7.7e-05
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 207 47.1 0.00012
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 207 47.1 0.00012
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 198 45.3 0.00025
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 198 45.3 0.00025
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 198 45.3 0.00025
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 198 45.3 0.00025
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427) 199 45.6 0.00026
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 198 45.4 0.00028
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514) 199 45.7 0.0003
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514) 199 45.7 0.0003
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514) 199 45.7 0.0003
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514) 199 45.7 0.0003
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 198 45.5 0.00034
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 198 45.5 0.00034
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 198 45.6 0.00034
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 198 45.6 0.00034
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 198 45.6 0.00035
XP_011509771 (OMIM: 616620) PREDICTED: ribosome bi ( 285) 194 44.6 0.00036
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 198 45.6 0.00036
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 198 45.6 0.00037
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 198 45.6 0.00039
NP_060726 (OMIM: 616620) ribosome biogenesis prote ( 423) 194 44.8 0.00047
NP_001132939 (OMIM: 300196) F-box-like/WD repeat-c ( 526) 189 44.0 0.00099
XP_011543873 (OMIM: 300196) PREDICTED: F-box-like/ ( 526) 189 44.0 0.00099
NP_001132940 (OMIM: 300196) F-box-like/WD repeat-c ( 526) 189 44.0 0.00099
NP_005638 (OMIM: 300196) F-box-like/WD repeat-cont ( 577) 189 44.1 0.001
NP_001132938 (OMIM: 300196) F-box-like/WD repeat-c ( 577) 189 44.1 0.001
XP_016885576 (OMIM: 400033) PREDICTED: F-box-like/ ( 540) 185 43.4 0.0016
XP_016885575 (OMIM: 400033) PREDICTED: F-box-like/ ( 577) 185 43.4 0.0017
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 185 43.4 0.0017
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582) 185 43.4 0.0017
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 185 43.4 0.0017
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 185 43.4 0.0017
NP_150600 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 181 42.7 0.0025
NP_599021 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 181 42.7 0.0025
NP_599020 (OMIM: 400033) F-box-like/WD repeat-cont ( 522) 181 42.7 0.0025
>>NP_000073 (OMIM: 216400,609412,614621) DNA excision re (396 aa)
initn: 2691 init1: 2691 opt: 2691 Z-score: 2482.1 bits: 468.1 E(85289): 1.6e-131
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KB7 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA
310 320 330 340 350 360
370 380 390
pF1KB7 WVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
::::::::::::::::::::::::::::::::::::
NP_000 WVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG
370 380 390
>>NP_001007234 (OMIM: 216400,609412,614621) DNA excision (338 aa)
initn: 2314 init1: 2314 opt: 2314 Z-score: 2137.5 bits: 404.1 E(85289): 2.6e-112
Smith-Waterman score: 2314; 100.0% identity (100.0% similar) in 338 aa overlap (59-396:1-338)
30 40 50 60 70 80
pF1KB7 GLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC
::::::::::::::::::::::::::::::
NP_001 MLSGGSDGVIVLYDLENSSRQSYYTCKAVC
10 20 30
90 100 110 120 130 140
pF1KB7 SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHH
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB7 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB7 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB7 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB7 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDA
280 290 300 310 320 330
390
pF1KB7 WSSSDEEG
::::::::
NP_001 WSSSDEEG
>>NP_001277214 (OMIM: 216400,609412,614621) DNA excision (243 aa)
initn: 1617 init1: 1617 opt: 1617 Z-score: 1500.6 bits: 285.8 E(85289): 7.7e-77
Smith-Waterman score: 1617; 98.7% identity (100.0% similar) in 238 aa overlap (159-396:6-243)
130 140 150 160 170 180
pF1KB7 TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE
...:::::::::::::::::::::::::::
NP_001 MGYKYITIGTRGPKVQLCDLKSGSCSHILQGHRQE
10 20 30
190 200 210 220 230 240
pF1KB7 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB7 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB7 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP
160 170 180 190 200 210
370 380 390
pF1KB7 VPDDDETTTKSQLNPAFEDAWSSSDEEG
::::::::::::::::::::::::::::
NP_001 VPDDDETTTKSQLNPAFEDAWSSSDEEG
220 230 240
>>NP_001007235 (OMIM: 216400,609412,614621) DNA excision (205 aa)
initn: 1246 init1: 1246 opt: 1246 Z-score: 1161.5 bits: 222.8 E(85289): 5.9e-58
Smith-Waterman score: 1246; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)
10 20 30 40 50 60
pF1KB7 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA
::::
NP_001 ILQGIFILFQTATTLSKRFNKKKRY
190 200
>>NP_056441 (OMIM: 610091) WD repeat and SOCS box-contai (421 aa)
initn: 216 init1: 75 opt: 237 Z-score: 233.2 bits: 52.1 E(85289): 3e-06
Smith-Waterman score: 237; 28.7% identity (59.7% similar) in 216 aa overlap (63-272:137-338)
40 50 60 70 80 90
pF1KB7 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY--YTCKAVCSI
:.: ... :.:. . . :: : . ..
NP_056 GDIVWSLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL
110 120 130 140 150 160
100 110 120 130 140
pF1KB7 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT----NTLQTADVFNFEETVYS
:: .: :. . . : . ...:.: ::::.::: : ... . . .. :::
NP_056 -VDHTEV----VRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKV--LRGHQNWVYS
170 180 190 200 210
150 160 170 180 190 200
pF1KB7 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS
.:: :. : .::. . : : .. . . . :.::.....: ..:: .:::::
NP_056 CAFSPDSSMLC--SVGA-SKAVFLWNMDKYTMIRKLEGHHHDVVACDFSPD-GALLATAS
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB7 ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD
:.:: .:: . .: .. : . :. :.. : .. :. ::::. ... :
NP_056 YDTRVYIWDPH--NGDILMEFGHLFPPPTPIF-AGGANDRWVRSVSFSHDGLHVASLADD
280 290 300 310 320 330
270 280 290 300 310 320
pF1KB7 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ
. .:.:
NP_056 KMVRFWRIDEDYPVQVAPLSNGLCCAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCR
340 350 360 370 380 390
>>NP_599027 (OMIM: 610091) WD repeat and SOCS box-contai (275 aa)
initn: 218 init1: 75 opt: 229 Z-score: 228.1 bits: 50.5 E(85289): 5.8e-06
Smith-Waterman score: 229; 29.9% identity (60.3% similar) in 184 aa overlap (93-272:22-192)
70 80 90 100 110 120
pF1KB7 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK
:: .: :. . . : . ...:.: ::
NP_599 MASFPPRVNEKEIGKLLLNLVDHTEV----VRDLTFAPDGSLILVSASRDK
10 20 30 40
130 140 150 160 170
pF1KB7 TLKVWDT----NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC
::.::: : ... . . .. ::: .:: :. : .::. . : : .. . .
NP_599 TLRVWDLKDDGNMMKV--LRGHQNWVYSCAFSPDSSMLC--SVGA-SKAVFLWNMDKYTM
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB7 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE
. :.::.....: ..:: .::::: :.:: .:: . .: .. : .
NP_599 IRKLEGHHHDVVACDFSPD-GALLATASYDTRVYIWDPH--NGDILMEFGHLFPPPTPIF
110 120 130 140 150
240 250 260 270 280 290
pF1KB7 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT
:. :.. : .. :. ::::. ... :. .:.:
NP_599 -AGGANDRWVRSVSFSHDGLHVASLADDKMVRFWRIDEDYPVQVAPLSNGLCCAFSTDGS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB7 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI
NP_599 VLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRVMPTQEVQELPIPSKLLEFLSYRI
220 230 240 250 260 270
>>XP_016879922 (OMIM: 610091) PREDICTED: WD repeat and S (383 aa)
initn: 168 init1: 75 opt: 212 Z-score: 210.7 bits: 47.8 E(85289): 5.3e-05
Smith-Waterman score: 212; 28.5% identity (58.8% similar) in 221 aa overlap (63-274:137-342)
40 50 60 70 80 90
pF1KB7 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY--YTCKAVCSI
:.: ... :.:. . . :: : . ..
XP_016 GDIVWSLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL
110 120 130 140 150 160
100 110 120 130 140
pF1KB7 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT----NTLQTADVFNFEETVYS
:: .: :. . . : . ...:.: ::::.::: : ... . . .. :::
XP_016 -VDHTEV----VRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKV--LRGHQNWVYS
170 180 190 200 210
150 160 170 180 190 200
pF1KB7 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS
.:: :. : .::. . : : .. . . . :.::.....: ..:: .:::::
XP_016 CAFSPDSSMLC--SVGA-SKAVFLWNMDKYTMIRKLEGHHHDVVACDFSPD-GALLATAS
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB7 ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC--FTSDGLHLLTVG
:.:: .:: . .. : .. . . :. . :::: :..:: .:..:
XP_016 YDTRVYIWDPHNGD---ILMEFGMVRFWRIDEDYPVQVAPLSNGLCCAFSTDG-SVLAAG
280 290 300 310 320 330
270 280 290 300 310 320
pF1KB7 T-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS
: :. . .: .
XP_016 THDGSVYFWATPRQVPSLQHLCRMSIRRVMPTQEVQELPIPSKLLEFLSYRI
340 350 360 370 380
>>NP_001309195 (OMIM: 607795,615922) U4/U6 small nuclear (279 aa)
initn: 207 init1: 89 opt: 207 Z-score: 207.8 bits: 46.8 E(85289): 7.7e-05
Smith-Waterman score: 235; 27.9% identity (54.8% similar) in 219 aa overlap (89-272:66-276)
60 70 80 90 100 110
pF1KB7 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP--DV--HRYSVETVQWYPHDTGM
:. :.: :. : : :.:.: .:
NP_001 IVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP--SGR
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 FTSSS-FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV--QLC
: ... .:.. ..:: :.. . . .: .: . .. .. .:: : . ..
NP_001 FLGTTCYDRSWRLWD---LEAQEEILHQEG-HSMGVYDIAFHQDGSLAGTGGLDAFGRVW
100 110 120 130 140
180 190 200 210 220 230
pF1KB7 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN-
::..: : .:.:: .:: ....:: : .::.:.:. :.::.:. :. :. :.
NP_001 DLRTGRCIMFLEGHLKEIYGINFSPN-GYHIATGSGDNTCKVWDLRQRR-CVYTIPAHQN
150 160 170 180 190 200
240 250 260
pF1KB7 ---GKKSQAVESA--------NTA----------------HNGKVNGLCFTSDGLHLLTV
: : . ... ::: :.::: :: ..::: . :
NP_001 LVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATC
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB7 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS
. : ..::
NP_001 SYDRTFKLWMAE
270
>>NP_001309196 (OMIM: 607795,615922) U4/U6 small nuclear (279 aa)
initn: 207 init1: 89 opt: 207 Z-score: 207.8 bits: 46.8 E(85289): 7.7e-05
Smith-Waterman score: 235; 27.9% identity (54.8% similar) in 219 aa overlap (89-272:66-276)
60 70 80 90 100 110
pF1KB7 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP--DV--HRYSVETVQWYPHDTGM
:. :.: :. : : :.:.: .:
NP_001 IVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP--SGR
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 FTSSS-FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV--QLC
: ... .:.. ..:: :.. . . .: .: . .. .. .:: : . ..
NP_001 FLGTTCYDRSWRLWD---LEAQEEILHQEG-HSMGVYDIAFHQDGSLAGTGGLDAFGRVW
100 110 120 130 140
180 190 200 210 220 230
pF1KB7 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN-
::..: : .:.:: .:: ....:: : .::.:.:. :.::.:. :. :. :.
NP_001 DLRTGRCIMFLEGHLKEIYGINFSPN-GYHIATGSGDNTCKVWDLRQRR-CVYTIPAHQN
150 160 170 180 190 200
240 250 260
pF1KB7 ---GKKSQAVESA--------NTA----------------HNGKVNGLCFTSDGLHLLTV
: : . ... ::: :.::: :: ..::: . :
NP_001 LVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATC
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB7 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS
. : ..::
NP_001 SYDRTFKLWMAE
270
>>NP_001231855 (OMIM: 607795,615922) U4/U6 small nuclear (521 aa)
initn: 207 init1: 89 opt: 207 Z-score: 204.5 bits: 47.1 E(85289): 0.00012
Smith-Waterman score: 235; 27.9% identity (54.8% similar) in 219 aa overlap (89-272:308-518)
60 70 80 90 100 110
pF1KB7 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP--DV--HRYSVETVQWYPHDTGM
:. :.: :. : : :.:.: .:
NP_001 IVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP--SGR
280 290 300 310 320 330
120 130 140 150 160 170
pF1KB7 FTSSS-FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV--QLC
: ... .:.. ..:: :.. . . .: .: . .. .. .:: : . ..
NP_001 FLGTTCYDRSWRLWD---LEAQEEILHQEG-HSMGVYDIAFHQDGSLAGTGGLDAFGRVW
340 350 360 370 380 390
180 190 200 210 220 230
pF1KB7 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN-
::..: : .:.:: .:: ....:: : .::.:.:. :.::.:. :. :. :.
NP_001 DLRTGRCIMFLEGHLKEIYGINFSPN-GYHIATGSGDNTCKVWDLRQRR-CVYTIPAHQN
400 410 420 430 440
240 250 260
pF1KB7 ---GKKSQAVESA--------NTA----------------HNGKVNGLCFTSDGLHLLTV
: : . ... ::: :.::: :: ..::: . :
NP_001 LVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATC
450 460 470 480 490 500
270 280 290 300 310 320
pF1KB7 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS
. : ..::
NP_001 SYDRTFKLWMAE
510 520
396 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:45:32 2016 done: Sat Nov 5 14:45:33 2016
Total Scan time: 8.230 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]