FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7965, 280 aa
  1>>>pF1KB7965 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2148+/-0.00103; mu= -1.8676+/- 0.063
 mean_var=433.8456+/-88.395, 0's: 0 Z-trim(117.3): 18  B-trim: 181 in 1/54
 Lambda= 0.061575
 statistics sampled from 18067 (18085) to 18067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.556), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS3305.1 HES1 gene_id:3280|Hs108|chr3            ( 280) 1916 183.2 1.8e-46
CCDS5.1 HES4 gene_id:57801|Hs108|chr1              ( 221)  792 83.2 1.8e-16
CCDS44034.1 HES4 gene_id:57801|Hs108|chr1          ( 247)  652 70.8 1.1e-12


>>CCDS3305.1 HES1 gene_id:3280|Hs108|chr3                 (280 aa)
 initn: 1916 init1: 1916 opt: 1916  Z-score: 947.7  bits: 183.2 E(32554): 1.8e-46
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPPPGPGGPQHAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPPPGPGGPQHAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FAPPPPLVPIPGGAAPPPGGAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FAPPPPLVPIPGGAAPPPGGAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAH
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 SGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN
       ::::::::::::::::::::::::::::::::::::::::
CCDS33 SGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN
              250       260       270       280

>>CCDS5.1 HES4 gene_id:57801|Hs108|chr1                   (221 aa)
 initn: 844 init1: 764 opt: 792  Z-score: 409.2  bits: 83.2 E(32554): 1.8e-16
Smith-Waterman score: 797; 60.9% identity (77.2% similar) in 215 aa overlap (1-200:1-214)

               10        20        30        40        50        60
pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRKSSKPIMEKRRRARINESLSQLKTL
       : ::   : :.::.:..:::.. :::::..:.::::::::.:::::::::::::.:::::
CCDS5. MAADTPGKPSASPMAGAPASASRTPDKPRSAAEHRKSSKPVMEKRRRARINESLAQLKTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNE
       :::::.:.:::::::::::::::::.:::.:.:.:.:::::.::.::::::::: ::. :
CCDS5. ILDALRKESSRHSKLEKADILEMTVRHLRSLRRVQVTAALSADPAVLGKYRAGFHECLAE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB7 VTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMTYPGQPHPALQAPPPPP---------P
       :.:::. :::: ..::.::::::: :. :..    :..  ::  :  : :         :
CCDS5. VNRFLAGCEGVPADVRSRLLGHLAACLRQLGPSRRPASLSPAAPAEAPAPEVYAGRPLLP
              130       140       150       160       170       180

             180            190        200       210       220     
pF1KB7 GPGGPQHAPFAPP--PPL---VPIPGGAAPP-PGGAPCKLGSQAGEAAKVFGGFQVVPAP
       . :::    .:::  : :   .:    :.:  :::                         
CCDS5. SLGGP-FPLLAPPLLPGLTRALPAAPRAGPQGPGGPWRPWLR                  
               190       200       210       220                   

         230       240       250       260       270       280
pF1KB7 DGQFAFLIPNGAFAHSGPVIPVYTSNSGTSVGPNAVSPSSGPSLTADSMWRPWRN

>>CCDS44034.1 HES4 gene_id:57801|Hs108|chr1               (247 aa)
 initn: 836 init1: 628 opt: 652  Z-score: 341.5  bits: 70.8 E(32554): 1.1e-12
Smith-Waterman score: 735; 54.4% identity (68.9% similar) in 241 aa overlap (1-200:1-240)

               10        20        30                              
pF1KB7 MPADIMEKNSSSPVAATPASVNTTPDKPKTASEHRK------------------------
       : ::   : :.::.:..:::.. :::::..:.::::                        
CCDS44 MAADTPGKPSASPMAGAPASASRTPDKPRSAAEHRKVGSRPGVRGATGGREGRGTQPVPD
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KB7 --SSKPIMEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRA
         ::::.:::::::::::::.::::::::::.:.:::::::::::::::::.:::.:.:.
CCDS44 PQSSKPVMEKRRRARINESLAQLKTLILDALRKESSRHSKLEKADILEMTVRHLRSLRRV
               70        80        90       100       110       120

          100       110       120       130       140       150    
pF1KB7 QMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQINAMT
       :.:::::.::.::::::::: ::. ::.:::. :::: ..::.::::::: :. :..   
CCDS44 QVTAALSADPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQLGPSR
              130       140       150       160       170       180

          160       170                180            190          
pF1KB7 YPGQPHPALQAPPPPP---------PGPGGPQHAPFAPP--PPL---VPIPGGAAPP-PG
        :..  ::  :  : :         :. :::    .:::  : :   .:    :.:  ::
CCDS44 RPASLSPAAPAEAPAPEVYAGRPLLPSLGGP-FPLLAPPLLPGLTRALPAAPRAGPQGPG
              190       200       210        220       230         

     200       210       220       230       240       250         
pF1KB7 GAPCKLGSQAGEAAKVFGGFQVVPAPDGQFAFLIPNGAFAHSGPVIPVYTSNSGTSVGPN
       :                                                           
CCDS44 GPWRPWLR                                                    
     240                                                           




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:17:31 2016 done: Sat Nov  5 10:17:32 2016
 Total Scan time:  2.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]