Result of FASTA (ccds) for
pF1KB7966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7966, 401 aa
1>>>pF1KB7966 401 - 401 aa - 401 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2856+/-0.000813; mu= 7.5518+/- 0.050
mean_var=247.6336+/-49.821, 0's: 0 Z-trim(116.6): 42 B-trim: 0 in 0/54
Lambda= 0.081502
statistics sampled from 17247 (17288) to 17247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.531), width: 16
Scan time: 3.730
The best scores are: opt bits E(32554)
CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 ( 401) 2747 335.3 6e-92
CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 ( 286) 1787 222.3 4.6e-58
CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 ( 272) 1784 221.9 5.6e-58
CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 ( 252) 1688 210.6 1.3e-54
CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 ( 237) 533 74.7 9.8e-14
>>CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 (401 aa)
initn: 2747 init1: 2747 opt: 2747 Z-score: 1764.2 bits: 335.3 E(32554): 6e-92
Smith-Waterman score: 2747; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KB7 MVLAQSRVSAGVGSPHCSGSGGGGSDSFPWPASHPGNPQCSFSTAFLASPRLSRGTLAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVLAQSRVSAGVGSPHCSGSGGGGSDSFPWPASHPGNPQCSFSTAFLASPRLSRGTLAYL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWELPRSPSQGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PPAPWSSLATPSALLGSSCAPPPPPARCPQPRALSPELGTKAGPRRPHRWELPRSPSQGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTIS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSG
310 320 330 340 350 360
370 380 390 400
pF1KB7 LFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
:::::::::::::::::::::::::::::::::::::::::
CCDS11 LFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
370 380 390 400
>>CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 (286 aa)
initn: 1787 init1: 1787 opt: 1787 Z-score: 1155.9 bits: 222.3 E(32554): 4.6e-58
Smith-Waterman score: 1787; 97.8% identity (98.5% similar) in 275 aa overlap (127-401:12-286)
100 110 120 130 140 150
pF1KB7 ELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDL
: : . .::::::::::::::::::::::
CCDS11 MTCSGKSCALARSSLTSSQGIVAASGSETEDEDSMDIPLDL
10 20 30 40
160 170 180 190 200 210
pF1KB7 SSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFI
50 60 70 80 90 100
220 230 240 250 260 270
pF1KB7 NARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAG
110 120 130 140 150 160
280 290 300 310 320 330
pF1KB7 PNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKN
170 180 190 200 210 220
340 350 360 370 380 390
pF1KB7 FTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQ
230 240 250 260 270 280
400
pF1KB7 AKLTA
:::::
CCDS11 AKLTA
>>CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 (272 aa)
initn: 1784 init1: 1784 opt: 1784 Z-score: 1154.3 bits: 221.9 E(32554): 5.6e-58
Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 268 aa overlap (134-401:5-272)
110 120 130 140 150 160
pF1KB7 PRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSG
::::::::::::::::::::::::::::::
CCDS11 MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSG
10 20 30
170 180 190 200 210 220
pF1KB7 KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLL
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 PDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGR
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 PLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLM
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB7 YPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
220 230 240 250 260 270
>>CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 (252 aa)
initn: 1688 init1: 1688 opt: 1688 Z-score: 1093.7 bits: 210.6 E(32554): 1.3e-54
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 252 aa overlap (150-401:1-252)
120 130 140 150 160 170
pF1KB7 AQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQIL
::::::::::::::::::::::::::::::
CCDS11 MDIPLDLSSSAGSGKRRRRGNLPKESVQIL
10 20 30
180 190 200 210 220 230
pF1KB7 RDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTI
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 SRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARP
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB7 SVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQS
160 170 180 190 200 210
360 370 380 390 400
pF1KB7 GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA
220 230 240 250
>>CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 (237 aa)
initn: 745 init1: 515 opt: 533 Z-score: 360.1 bits: 74.7 E(32554): 9.8e-14
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (148-398:3-217)
120 130 140 150 160 170
pF1KB7 QGAQGPAPRRRLLETMKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQ
:: :. : . . .:::.::::::::::.
CCDS13 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVK
10 20 30
180 190 200 210 220 230
pF1KB7 ILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQF
::::::: :::::::::::: :: ::.::.::.::::::::::::::::::::::::::
CCDS13 ILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQF
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 TISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLA
::::::.: :... .: : .:.. : :.. : :.
CCDS13 TISRRGGKASDVA-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LS
100 110 120
300 310 320 330 340 350
pF1KB7 RPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNT
:. :. .:: :. . . ... . : : : : .:
CCDS13 VCSMPLHSGQGEKPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-----
130 140 150 160 170
360 370 380 390 400
pF1KB7 QSGLFNTPPPTPPDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
:::::::::::. .. :::.:::::.:::.:::::::: .
CCDS13 --GLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSEN
180 190 200 210 220 230
CCDS13 PQ
401 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:18:09 2016 done: Sat Nov 5 10:18:09 2016
Total Scan time: 3.730 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]