Result of FASTA (omim) for
pF1KB7969
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7969, 285 aa
1>>>pF1KB7969 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2554+/-0.000384; mu= 14.7684+/- 0.024
mean_var=58.8289+/-11.723, 0's: 0 Z-trim(111.3): 45 B-trim: 27 in 1/51
Lambda= 0.167216
statistics sampled from 19871 (19918) to 19871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.234), width: 16
Scan time: 6.020
The best scores are: opt bits E(85289)
NP_001309021 (OMIM: 604913) CCR4-NOT transcription ( 285) 1920 471.7 7e-133
NP_037486 (OMIM: 604913) CCR4-NOT transcription co ( 285) 1920 471.7 7e-133
NP_001309020 (OMIM: 604913) CCR4-NOT transcription ( 285) 1920 471.7 7e-133
XP_005273538 (OMIM: 604913) PREDICTED: CCR4-NOT tr ( 285) 1920 471.7 7e-133
NP_001309019 (OMIM: 604913) CCR4-NOT transcription ( 285) 1920 471.7 7e-133
NP_001309018 (OMIM: 604913) CCR4-NOT transcription ( 244) 1630 401.7 7e-112
NP_001309016 (OMIM: 604913) CCR4-NOT transcription ( 244) 1630 401.7 7e-112
NP_473367 (OMIM: 604913) CCR4-NOT transcription co ( 244) 1630 401.7 7e-112
NP_001309017 (OMIM: 604913) CCR4-NOT transcription ( 244) 1630 401.7 7e-112
NP_001309023 (OMIM: 604913) CCR4-NOT transcription ( 256) 1629 401.5 8.7e-112
XP_016865537 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1500 370.4 2.3e-102
XP_016865539 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1500 370.4 2.3e-102
NP_001288002 (OMIM: 603731) CCR4-NOT transcription ( 292) 1500 370.4 2.3e-102
XP_016865538 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1500 370.4 2.3e-102
XP_016865540 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 292) 1500 370.4 2.3e-102
NP_004770 (OMIM: 603731) CCR4-NOT transcription co ( 292) 1500 370.4 2.3e-102
NP_001309024 (OMIM: 604913) CCR4-NOT transcription ( 204) 1371 339.2 3.9e-93
NP_001309026 (OMIM: 604913) CCR4-NOT transcription ( 204) 1371 339.2 3.9e-93
NP_001309025 (OMIM: 604913) CCR4-NOT transcription ( 204) 1371 339.2 3.9e-93
NP_001309022 (OMIM: 604913) CCR4-NOT transcription ( 307) 1203 298.7 8.8e-81
NP_001309029 (OMIM: 604913) CCR4-NOT transcription ( 163) 1081 269.2 3.6e-72
NP_001309027 (OMIM: 604913) CCR4-NOT transcription ( 163) 1081 269.2 3.6e-72
NP_001309028 (OMIM: 604913) CCR4-NOT transcription ( 163) 1081 269.2 3.6e-72
NP_001288009 (OMIM: 603731) CCR4-NOT transcription ( 186) 904 226.5 2.9e-59
NP_001288004 (OMIM: 603731) CCR4-NOT transcription ( 186) 904 226.5 2.9e-59
XP_016865546 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 904 226.5 2.9e-59
NP_001288012 (OMIM: 603731) CCR4-NOT transcription ( 186) 904 226.5 2.9e-59
NP_001288011 (OMIM: 603731) CCR4-NOT transcription ( 186) 904 226.5 2.9e-59
XP_011536008 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 904 226.5 2.9e-59
XP_011536010 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 186) 904 226.5 2.9e-59
NP_001288006 (OMIM: 603731) CCR4-NOT transcription ( 186) 904 226.5 2.9e-59
XP_005268584 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
XP_016865545 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
XP_016865541 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
XP_016865543 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
XP_016865544 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
XP_016865542 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 238) 624 159.0 7.8e-39
NP_001288003 (OMIM: 603731) CCR4-NOT transcription ( 238) 624 159.0 7.8e-39
XP_016865547 (OMIM: 603731) PREDICTED: CCR4-NOT tr ( 128) 574 146.8 1.9e-35
NP_001288015 (OMIM: 603731) CCR4-NOT transcription ( 128) 574 146.8 1.9e-35
>>NP_001309021 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2506.6 bits: 471.7 E(85289): 7e-133
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_037486 (OMIM: 604913) CCR4-NOT transcription comple (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2506.6 bits: 471.7 E(85289): 7e-133
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
NP_037 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309020 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2506.6 bits: 471.7 E(85289): 7e-133
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>XP_005273538 (OMIM: 604913) PREDICTED: CCR4-NOT transc (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2506.6 bits: 471.7 E(85289): 7e-133
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309019 (OMIM: 604913) CCR4-NOT transcription com (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2506.6 bits: 471.7 E(85289): 7e-133
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>NP_001309018 (OMIM: 604913) CCR4-NOT transcription com (244 aa)
initn: 1686 init1: 1630 opt: 1630 Z-score: 2129.6 bits: 401.7 E(85289): 7e-112
Smith-Waterman score: 1630; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.
NP_001 MREV
>>NP_001309016 (OMIM: 604913) CCR4-NOT transcription com (244 aa)
initn: 1686 init1: 1630 opt: 1630 Z-score: 2129.6 bits: 401.7 E(85289): 7e-112
Smith-Waterman score: 1630; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.
NP_001 MREV
>>NP_473367 (OMIM: 604913) CCR4-NOT transcription comple (244 aa)
initn: 1686 init1: 1630 opt: 1630 Z-score: 2129.6 bits: 401.7 E(85289): 7e-112
Smith-Waterman score: 1630; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.
NP_473 MREV
>>NP_001309017 (OMIM: 604913) CCR4-NOT transcription com (244 aa)
initn: 1686 init1: 1630 opt: 1630 Z-score: 2129.6 bits: 401.7 E(85289): 7e-112
Smith-Waterman score: 1630; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.
NP_001 MREV
>>NP_001309023 (OMIM: 604913) CCR4-NOT transcription com (256 aa)
initn: 1629 init1: 1629 opt: 1629 Z-score: 2128.0 bits: 401.5 E(85289): 8.7e-112
Smith-Waterman score: 1629; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::
NP_001 MRENIARCANCRFSET
250
285 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:20:00 2016 done: Sat Nov 5 10:20:01 2016
Total Scan time: 6.020 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]