FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7971, 290 aa
  1>>>pF1KB7971 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8510+/-0.000321; mu= 12.6838+/- 0.020
 mean_var=78.4747+/-15.323, 0's: 0 Z-trim(116.0): 6  B-trim: 0 in 0/55
 Lambda= 0.144780
 statistics sampled from 26762 (26766) to 26762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.314), width:  16
 Scan time:  7.250

The best scores are:                                      opt bits E(85289)
NP_001018119 (OMIM: 300931) pirin [Homo sapiens]   ( 290) 1979 422.6 4.2e-118
NP_003653 (OMIM: 300931) pirin [Homo sapiens]      ( 290) 1979 422.6 4.2e-118


>>NP_001018119 (OMIM: 300931) pirin [Homo sapiens]        (290 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2241.3  bits: 422.6 E(85289): 4.2e-118
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB7 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB7 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
              250       260       270       280       290

>>NP_003653 (OMIM: 300931) pirin [Homo sapiens]           (290 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2241.3  bits: 422.6 E(85289): 4.2e-118
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB7 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB7 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
              250       260       270       280       290




290 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:47:23 2016 done: Sat Nov  5 14:47:24 2016
 Total Scan time:  7.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]