FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7975, 427 aa
  1>>>pF1KB7975 427 - 427 aa - 427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3702+/-0.000781; mu= 18.7161+/- 0.047
 mean_var=87.7380+/-17.435, 0's: 0 Z-trim(110.4): 13  B-trim: 180 in 1/49
 Lambda= 0.136924
 statistics sampled from 11599 (11608) to 11599 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS9275.2 PUS1 gene_id:80324|Hs108|chr12          ( 427) 2931 588.7 3.7e-168
CCDS31928.1 PUS1 gene_id:80324|Hs108|chr12         ( 399) 2729 548.7 3.6e-156


>>CCDS9275.2 PUS1 gene_id:80324|Hs108|chr12               (427 aa)
 initn: 2931 init1: 2931 opt: 2931  Z-score: 3132.5  bits: 588.7 E(32554): 3.7e-168
Smith-Waterman score: 2931; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)

               10        20        30        40        50        60
pF1KB7 MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
              370       380       390       400       410       420

              
pF1KB7 EGDGDTD
       :::::::
CCDS92 EGDGDTD
              

>>CCDS31928.1 PUS1 gene_id:80324|Hs108|chr12              (399 aa)
 initn: 2729 init1: 2729 opt: 2729  Z-score: 2917.2  bits: 548.7 E(32554): 3.6e-156
Smith-Waterman score: 2729; 100.0% identity (100.0% similar) in 399 aa overlap (29-427:1-399)

               10        20        30        40        50        60
pF1KB7 MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
                                   ::::::::::::::::::::::::::::::::
CCDS31                             MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
                                           10        20        30  

               70        80        90       100       110       120
pF1KB7 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB7 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB7 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB7 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB7 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB7 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
            340       350       360       370       380       390  

              
pF1KB7 EGDGDTD
       :::::::
CCDS31 EGDGDTD
              




427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:48:56 2016 done: Sat Nov  5 14:48:56 2016
 Total Scan time:  2.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]