FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7995, 450 aa
  1>>>pF1KB7995 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6831+/-0.00108; mu= 14.6806+/- 0.064
 mean_var=58.8127+/-12.092, 0's: 0 Z-trim(102.1): 39  B-trim: 24 in 1/48
 Lambda= 0.167239
 statistics sampled from 6781 (6790) to 6781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.209), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS1531.1 TAF1A gene_id:9015|Hs108|chr1           ( 450) 3034 740.8 6.4e-214
CCDS1532.1 TAF1A gene_id:9015|Hs108|chr1           ( 336) 2271 556.7 1.3e-158


>>CCDS1531.1 TAF1A gene_id:9015|Hs108|chr1                (450 aa)
 initn: 3034 init1: 3034 opt: 3034  Z-score: 3954.0  bits: 740.8 E(32554): 6.4e-214
Smith-Waterman score: 3034; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
              370       380       390       400       410       420

              430       440       450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
       ::::::::::::::::::::::::::::::
CCDS15 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
              430       440       450

>>CCDS1532.1 TAF1A gene_id:9015|Hs108|chr1                (336 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 2961.3  bits: 556.7 E(32554): 1.3e-158
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)

           90       100       110       120       130       140    
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
                                     ::::::::::::::::::::::::::::::
CCDS15                               MESFNTFANRMKNIGVMNYLKISLQHALYL
                                             10        20        30

          150       160       170       180       190       200    
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
               40        50        60        70        80        90

          210       220       230       240       250       260    
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
              100       110       120       130       140       150

          270       280       290       300       310       320    
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
              160       170       180       190       200       210

          330       340       350       360       370       380    
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
              220       230       240       250       260       270

          390       400       410       420       430       440    
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
              280       290       300       310       320       330

          450
pF1KB7 IVNPRL
       ::::::
CCDS15 IVNPRL
             




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:53:35 2016 done: Sat Nov  5 07:53:35 2016
 Total Scan time:  2.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]