Result of FASTA (omim) for
pF1KB7995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7995, 450 aa
1>>>pF1KB7995 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2238+/-0.000485; mu= 17.6414+/- 0.030
mean_var=65.7088+/-13.806, 0's: 0 Z-trim(108.6): 43 B-trim: 78 in 1/49
Lambda= 0.158220
statistics sampled from 16719 (16742) to 16719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.196), width: 16
Scan time: 7.710
The best scores are: opt bits E(85289)
NP_005672 (OMIM: 604903) TATA box-binding protein- ( 450) 3034 702.0 7.9e-202
NP_001188465 (OMIM: 604903) TATA box-binding prote ( 450) 3034 702.0 7.9e-202
NP_647603 (OMIM: 604903) TATA box-binding protein- ( 336) 2271 527.8 1.7e-149
XP_006711676 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858248 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858249 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858247 (OMIM: 604903) PREDICTED: TATA box-bi ( 412) 2143 498.6 1.2e-140
XP_006711675 (OMIM: 604903) PREDICTED: TATA box-bi ( 412) 2143 498.6 1.2e-140
XP_005273400 (OMIM: 604903) PREDICTED: TATA box-bi ( 311) 1987 463.0 5.1e-130
>>NP_005672 (OMIM: 604903) TATA box-binding protein-asso (450 aa)
initn: 3034 init1: 3034 opt: 3034 Z-score: 3744.4 bits: 702.0 E(85289): 7.9e-202
Smith-Waterman score: 3034; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
370 380 390 400 410 420
430 440 450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
::::::::::::::::::::::::::::::
NP_005 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
430 440 450
>>NP_001188465 (OMIM: 604903) TATA box-binding protein-a (450 aa)
initn: 3034 init1: 3034 opt: 3034 Z-score: 3744.4 bits: 702.0 E(85289): 7.9e-202
Smith-Waterman score: 3034; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
370 380 390 400 410 420
430 440 450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
::::::::::::::::::::::::::::::
NP_001 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
430 440 450
>>NP_647603 (OMIM: 604903) TATA box-binding protein-asso (336 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 2805.0 bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)
90 100 110 120 130 140
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
::::::::::::::::::::::::::::::
NP_647 MESFNTFANRMKNIGVMNYLKISLQHALYL
10 20 30
150 160 170 180 190 200
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
280 290 300 310 320 330
450
pF1KB7 IVNPRL
::::::
NP_647 IVNPRL
>>XP_006711676 (OMIM: 604903) PREDICTED: TATA box-bindin (336 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 2805.0 bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)
90 100 110 120 130 140
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
::::::::::::::::::::::::::::::
XP_006 MESFNTFANRMKNIGVMNYLKISLQHALYL
10 20 30
150 160 170 180 190 200
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
280 290 300 310 320 330
450
pF1KB7 IVNPRL
::::::
XP_006 IVNPRL
>>XP_016858248 (OMIM: 604903) PREDICTED: TATA box-bindin (336 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 2805.0 bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)
90 100 110 120 130 140
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
::::::::::::::::::::::::::::::
XP_016 MESFNTFANRMKNIGVMNYLKISLQHALYL
10 20 30
150 160 170 180 190 200
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
280 290 300 310 320 330
450
pF1KB7 IVNPRL
::::::
XP_016 IVNPRL
>>XP_016858249 (OMIM: 604903) PREDICTED: TATA box-bindin (336 aa)
initn: 2271 init1: 2271 opt: 2271 Z-score: 2805.0 bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)
90 100 110 120 130 140
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
::::::::::::::::::::::::::::::
XP_016 MESFNTFANRMKNIGVMNYLKISLQHALYL
10 20 30
150 160 170 180 190 200
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
280 290 300 310 320 330
450
pF1KB7 IVNPRL
::::::
XP_016 IVNPRL
>>XP_016858247 (OMIM: 604903) PREDICTED: TATA box-bindin (412 aa)
initn: 2136 init1: 2136 opt: 2143 Z-score: 2645.8 bits: 498.6 E(85289): 1.2e-140
Smith-Waterman score: 2693; 91.6% identity (91.6% similar) in 450 aa overlap (1-450:1-412)
10 20 30 40 50 60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
::::::::::::::::::::::::::::::::::::::
XP_016 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEI----------------------
70 80 90
130 140 150 160 170 180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
::::::::::::::::::::::::::::::::::::::::::::
XP_016 ----------------SLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
330 340 350 360 370 380
430 440 450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
::::::::::::::::::::::::::::::
XP_016 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
390 400 410
>>XP_006711675 (OMIM: 604903) PREDICTED: TATA box-bindin (412 aa)
initn: 2136 init1: 2136 opt: 2143 Z-score: 2645.8 bits: 498.6 E(85289): 1.2e-140
Smith-Waterman score: 2693; 91.6% identity (91.6% similar) in 450 aa overlap (1-450:1-412)
10 20 30 40 50 60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
::::::::::::::::::::::::::::::::::::::
XP_006 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEI----------------------
70 80 90
130 140 150 160 170 180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
::::::::::::::::::::::::::::::::::::::::::::
XP_006 ----------------SLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
330 340 350 360 370 380
430 440 450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
::::::::::::::::::::::::::::::
XP_006 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
390 400 410
>>XP_005273400 (OMIM: 604903) PREDICTED: TATA box-bindin (311 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 2455.2 bits: 463.0 E(85289): 5.1e-130
Smith-Waterman score: 1987; 99.0% identity (99.3% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_005 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
.:
XP_005 QKISIMYSTLR
310
450 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:53:36 2016 done: Sat Nov 5 07:53:37 2016
Total Scan time: 7.710 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]