FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8003, 163 aa
  1>>>pF1KB8003 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6927+/-0.00063; mu= 10.6749+/- 0.038
 mean_var=74.7538+/-14.566, 0's: 0 Z-trim(112.4): 59  B-trim: 0 in 0/52
 Lambda= 0.148340
 statistics sampled from 13094 (13153) to 13094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.404), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS12220.1 PIN1 gene_id:5300|Hs108|chr19          ( 163) 1096 242.9 6.6e-65


>>CCDS12220.1 PIN1 gene_id:5300|Hs108|chr19               (163 aa)
 initn: 1096 init1: 1096 opt: 1096  Z-score: 1278.8  bits: 242.9 E(32554): 6.6e-65
Smith-Waterman score: 1096; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG
               70        80        90       100       110       120

              130       140       150       160   
pF1KB8 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
       :::::::::::::::::::::::::::::::::::::::::::
CCDS12 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
              130       140       150       160   




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:12:25 2016 done: Wed Nov  2 23:12:25 2016
 Total Scan time:  1.570 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]