Result of FASTA (omim) for
pF1KB8003
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8003, 163 aa
1>>>pF1KB8003 163 - 163 aa - 163 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6336+/-0.000294; mu= 11.3737+/- 0.018
mean_var=88.0988+/-17.722, 0's: 0 Z-trim(119.7): 116 B-trim: 1599 in 1/54
Lambda= 0.136644
statistics sampled from 33870 (34043) to 33870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.399), width: 16
Scan time: 4.640
The best scores are: opt bits E(85289)
NP_006212 (OMIM: 601052) peptidyl-prolyl cis-trans ( 163) 1096 225.0 4.2e-59
XP_011526370 (OMIM: 601052) PREDICTED: peptidyl-pr ( 168) 962 198.6 3.8e-51
NP_006214 (OMIM: 300252) peptidyl-prolyl cis-trans ( 156) 190 46.4 2.3e-05
XP_011527381 (OMIM: 606409,613385) PREDICTED: E3 u ( 692) 155 40.0 0.0088
XP_005260627 (OMIM: 606409,613385) PREDICTED: E3 u ( 692) 155 40.0 0.0088
XP_016883580 (OMIM: 606409,613385) PREDICTED: E3 u ( 752) 155 40.0 0.0094
NP_001244067 (OMIM: 606409,613385) E3 ubiquitin-pr ( 752) 155 40.0 0.0094
>>NP_006212 (OMIM: 601052) peptidyl-prolyl cis-trans iso (163 aa)
initn: 1096 init1: 1096 opt: 1096 Z-score: 1182.2 bits: 225.0 E(85289): 4.2e-59
Smith-Waterman score: 1096; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)
10 20 30 40 50 60
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARG
70 80 90 100 110 120
130 140 150 160
pF1KB8 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
:::::::::::::::::::::::::::::::::::::::::::
NP_006 DLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
130 140 150 160
>>XP_011526370 (OMIM: 601052) PREDICTED: peptidyl-prolyl (168 aa)
initn: 962 init1: 962 opt: 962 Z-score: 1039.2 bits: 198.6 E(85289): 3.8e-51
Smith-Waterman score: 962; 100.0% identity (100.0% similar) in 144 aa overlap (20-163:25-168)
10 20 30 40 50
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV
::::::::::::::::::::::::::::::::::::
XP_011 MQKVRTPRPREDISHLNPDSDLNPGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 RCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSS
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 AKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
130 140 150 160
>>NP_006214 (OMIM: 300252) peptidyl-prolyl cis-trans iso (156 aa)
initn: 210 init1: 127 opt: 190 Z-score: 217.2 bits: 46.4 E(85289): 2.3e-05
Smith-Waterman score: 190; 36.2% identity (62.3% similar) in 130 aa overlap (37-160:28-151)
10 20 30 40 50 60
pF1KB8 LPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQ
:.:.:.:: : :.: : : :..:
NP_006 MPMAGLLKGLVRQLERFSVQQQASKMPPKGKSGSG-KAGKGGAA--SGSDSADKKAQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 SRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFS
. . .. :. . : : ..:.::: . :. .:.:.:. ..:. :::: ..
NP_006 GPKGGG-NAVKVRHILCEKHGKIMEAMEKLKSGMR-FNEVAAQYSE-DKARQGGDLGWMT
60 70 80 90 100 110
130 140 150 160
pF1KB8 RGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIILRTE
::.: ::..:.::: .. :. ::::: : :::.
NP_006 RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK
120 130 140 150
>>XP_011527381 (OMIM: 606409,613385) PREDICTED: E3 ubiqu (692 aa)
initn: 208 init1: 94 opt: 155 Z-score: 170.9 bits: 40.0 E(85289): 0.0088
Smith-Waterman score: 155; 31.8% identity (59.1% similar) in 110 aa overlap (7-111:229-332)
10 20 30
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER
:::::::: . :.::::. :: : .:::
XP_011 AMQQFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEKR-TDSNGRVYFVNHNTRITQWED
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB8 PSGNSSSGGKN-GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELING----
: .... . : .: : . . ...:: ... . :: . ::. ::
XP_011 PRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP---RTGKSALD--NGPQIA
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB8 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVF
:.. .:. . :. .:..
XP_011 YVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPG
320 330 340 350 360 370
>>XP_005260627 (OMIM: 606409,613385) PREDICTED: E3 ubiqu (692 aa)
initn: 208 init1: 94 opt: 155 Z-score: 170.9 bits: 40.0 E(85289): 0.0088
Smith-Waterman score: 155; 31.8% identity (59.1% similar) in 110 aa overlap (7-111:229-332)
10 20 30
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER
:::::::: . :.::::. :: : .:::
XP_005 AMQQFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEKR-TDSNGRVYFVNHNTRITQWED
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB8 PSGNSSSGGKN-GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELING----
: .... . : .: : . . ...:: ... . :: . ::. ::
XP_005 PRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP---RTGKSALD--NGPQIA
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB8 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVF
:.. .:. . :. .:..
XP_005 YVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPG
320 330 340 350 360 370
>>XP_016883580 (OMIM: 606409,613385) PREDICTED: E3 ubiqu (752 aa)
initn: 208 init1: 94 opt: 155 Z-score: 170.4 bits: 40.0 E(85289): 0.0094
Smith-Waterman score: 155; 31.8% identity (59.1% similar) in 110 aa overlap (7-111:289-392)
10 20 30
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER
:::::::: . :.::::. :: : .:::
XP_016 AMQQFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEKR-TDSNGRVYFVNHNTRITQWED
260 270 280 290 300 310
40 50 60 70 80 90
pF1KB8 PSGNSSSGGKN-GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELING----
: .... . : .: : . . ...:: ... . :: . ::. ::
XP_016 PRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP---RTGKSALD--NGPQIA
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB8 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVF
:.. .:. . :. .:..
XP_016 YVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPG
380 390 400 410 420 430
>>NP_001244067 (OMIM: 606409,613385) E3 ubiquitin-protei (752 aa)
initn: 208 init1: 94 opt: 155 Z-score: 170.4 bits: 40.0 E(85289): 0.0094
Smith-Waterman score: 155; 31.8% identity (59.1% similar) in 110 aa overlap (7-111:289-392)
10 20 30
pF1KB8 MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWER
:::::::: . :.::::. :: : .:::
NP_001 AMQQFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEKR-TDSNGRVYFVNHNTRITQWED
260 270 280 290 300 310
40 50 60 70 80 90
pF1KB8 PSGNSSSGGKN-GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELING----
: .... . : .: : . . ...:: ... . :: . ::. ::
NP_001 PRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP---RTGKSALD--NGPQIA
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB8 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVF
:.. .:. . :. .:..
NP_001 YVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPG
380 390 400 410 420 430
163 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:12:25 2016 done: Wed Nov 2 23:12:26 2016
Total Scan time: 4.640 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]