FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8004, 704 aa
  1>>>pF1KB8004 704 - 704 aa - 704 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3197+/-0.000822; mu= 11.2510+/- 0.050
 mean_var=124.5928+/-24.817, 0's: 0 Z-trim(111.4): 9  B-trim: 0 in 0/52
 Lambda= 0.114902
 statistics sampled from 12317 (12319) to 12317 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.378), width:  16
 Scan time:  3.410

The best scores are:                                      opt bits E(32554)
CCDS13388.1 PCIF1 gene_id:63935|Hs108|chr20        ( 704) 4870 818.6       0


>>CCDS13388.1 PCIF1 gene_id:63935|Hs108|chr20             (704 aa)
 initn: 4870 init1: 4870 opt: 4870  Z-score: 4367.5  bits: 818.6 E(32554):    0
Smith-Waterman score: 4870; 100.0% identity (100.0% similar) in 704 aa overlap (1-704:1-704)

               10        20        30        40        50        60
pF1KB8 MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CSKIYHISLEYVKRIREKHLAILKENNISEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSKIYHISLEYVKRIREKHLAILKENNISEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 MHMENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHMENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 VGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 LDFAPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LDFAPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRME
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 QSRFKRHQLILPAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QSRFKRHQLILPAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERL
              610       620       630       640       650       660

              670       680       690       700    
pF1KB8 QELSAAYRQSGRSHSSGSSSSSSSEAKDRDSGREQGPSREPHPT
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QELSAAYRQSGRSHSSGSSSSSSSEAKDRDSGREQGPSREPHPT
              670       680       690       700    




704 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:12:54 2016 done: Wed Nov  2 23:12:55 2016
 Total Scan time:  3.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]