FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8106, 177 aa 1>>>pF1KB8106 177 - 177 aa - 177 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6966+/-0.00094; mu= 9.7303+/- 0.056 mean_var=53.0904+/-10.330, 0's: 0 Z-trim(103.5): 26 B-trim: 0 in 0/51 Lambda= 0.176022 statistics sampled from 7422 (7439) to 7422 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.229), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12 ( 177) 1113 290.6 3.4e-79 CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12 ( 185) 1081 282.5 1e-76 CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12 ( 154) 935 245.4 1.2e-65 CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12 ( 160) 920 241.6 1.8e-64 CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17 ( 210) 859 226.1 1.1e-59 >>CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12 (177 aa) initn: 1113 init1: 1113 opt: 1113 Z-score: 1535.2 bits: 290.6 E(32554): 3.4e-79 Smith-Waterman score: 1113; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR 130 140 150 160 170 >>CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12 (185 aa) initn: 1080 init1: 1080 opt: 1081 Z-score: 1490.9 bits: 282.5 E(32554): 1e-76 Smith-Waterman score: 1081; 97.2% identity (98.3% similar) in 177 aa overlap (1-177:9-185) 10 20 30 40 50 pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT : . . :::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MGGFRTEGMFVSLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 HRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 HRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 ALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 ALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIK 130 140 150 160 170 180 pF1KB8 WSLLR ::::: CCDS61 WSLLR >>CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12 (154 aa) initn: 954 init1: 935 opt: 935 Z-score: 1292.0 bits: 245.4 E(32554): 1.2e-65 Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 148 aa overlap (30-177:7-154) 10 20 30 40 50 60 pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA ::::::::::::::::::::::::::::::: CCDS61 MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA 10 20 30 70 80 90 100 110 120 pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG 40 50 60 70 80 90 130 140 150 160 170 pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR 100 110 120 130 140 150 >>CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12 (160 aa) initn: 920 init1: 920 opt: 920 Z-score: 1271.1 bits: 241.6 E(32554): 1.8e-64 Smith-Waterman score: 965; 90.4% identity (90.4% similar) in 177 aa overlap (1-177:1-160) 10 20 30 40 50 60 pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 LLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEG 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 LFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR :::::::::::::::::::::::::: :::::::::::::: CCDS61 LFLAVDEIVDGGVILESDPQQVVHRV-----------------LQSAKEQIKWSLLR 130 140 150 160 >>CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17 (210 aa) initn: 873 init1: 859 opt: 859 Z-score: 1185.3 bits: 226.1 E(32554): 1.1e-59 Smith-Waterman score: 859; 74.9% identity (94.7% similar) in 171 aa overlap (7-177:40-210) 10 20 30 pF1KB8 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP ::::::.::..:::::: ::.:::::::.: CCDS74 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB8 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: CCDS74 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB8 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..: :: CCDS74 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT 130 140 150 160 170 180 160 170 pF1KB8 EQTVSQVLQSAKEQIKWSLLR ::.:.:::::::::::::::. CCDS74 EQSVAQVLQSAKEQIKWSLLK 190 200 210 177 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 09:32:34 2016 done: Fri Nov 4 09:32:34 2016 Total Scan time: 1.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]