FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8109, 153 aa
  1>>>pF1KB8109 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1577+/-0.000255; mu= 13.2948+/- 0.016
 mean_var=61.7573+/-12.107, 0's: 0 Z-trim(120.7): 2  B-trim: 231 in 1/57
 Lambda= 0.163204
 statistics sampled from 36271 (36273) to 36271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.425), width:  16
 Scan time:  4.420

The best scores are:                                      opt bits E(85289)
NP_005861 (OMIM: 602949) histone deacetylase compl ( 172) 1024 248.5 3.6e-66
XP_011533170 (OMIM: 602949) PREDICTED: histone dea ( 104)  615 152.1 2.3e-37


>>NP_005861 (OMIM: 602949) histone deacetylase complex s  (172 aa)
 initn: 1024 init1: 1024 opt: 1024  Z-score: 1309.0  bits: 248.5 E(85289): 3.6e-66
Smith-Waterman score: 1024; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:20-172)

                                  10        20        30        40 
pF1KB8                    MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH
                          :::::::::::::::::::::::::::::::::::::::::
NP_005 MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB8 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY
               70        80        90       100       110       120

             110       120       130       140       150   
pF1KB8 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
              130       140       150       160       170  

>>XP_011533170 (OMIM: 602949) PREDICTED: histone deacety  (104 aa)
 initn: 612 init1: 612 opt: 615  Z-score: 791.9  bits: 152.1 E(85289): 2.3e-37
Smith-Waterman score: 615; 94.9% identity (96.9% similar) in 98 aa overlap (56-153:7-104)

          30        40        50        60        70        80     
pF1KB8 CPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGT
                                     .:.   ::::::::::::::::::::::::
XP_011                         MMYKIVFQLCIRMDATLKELTSLVKEVYPEARKKGT
                                       10        20        30      

          90       100       110       120       130       140     
pF1KB8 HFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPP
         40        50        60        70        80        90      

         150   
pF1KB8 PSGRMRPY
       ::::::::
XP_011 PSGRMRPY
        100    




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:35:28 2016 done: Fri Nov  4 09:35:29 2016
 Total Scan time:  4.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]