Result of FASTA (ccds) for
pF1KB8112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8112, 152 aa
1>>>pF1KB8112 152 - 152 aa - 152 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2686+/-0.000646; mu= 11.9151+/- 0.039
mean_var=62.7498+/-12.617, 0's: 0 Z-trim(110.3): 64 B-trim: 0 in 0/50
Lambda= 0.161908
statistics sampled from 11430 (11501) to 11430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.353), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 1019 245.9 7.2e-66
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 464 116.3 9.5e-27
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 460 115.3 1.4e-26
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 459 115.1 1.7e-26
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 458 114.8 2e-26
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 456 114.4 2.7e-26
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 453 113.7 4.4e-26
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 444 111.6 1.9e-25
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 444 111.6 2.5e-25
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 432 108.7 1.1e-24
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 427 107.6 2.5e-24
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 429 108.1 2.7e-24
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 426 107.4 3.7e-24
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 427 107.7 3.9e-24
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 425 107.1 4.2e-24
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 426 107.4 4.7e-24
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 423 106.7 5.8e-24
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 400 101.2 1.8e-22
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 397 100.6 4e-22
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 393 99.7 8.5e-22
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 372 94.8 3.1e-20
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 366 93.4 6.8e-20
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 354 90.5 3.4e-19
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 352 90.1 5.3e-19
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 333 85.6 1.3e-17
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 326 84.0 3.8e-17
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 320 82.7 1.4e-16
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 ( 149) 307 79.6 8.2e-16
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 303 78.6 1.3e-15
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 297 77.2 4.2e-15
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 295 76.8 6e-15
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 295 76.8 6.8e-15
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 273 71.7 2.4e-13
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 253 67.0 5.8e-12
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 249 66.1 1.2e-11
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 243 64.6 2.8e-11
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 238 63.5 6.4e-11
>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1296.0 bits: 245.9 E(32554): 7.2e-66
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
70 80 90 100 110 120
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
::::::::::::::::::::::::::::::::
CCDS31 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
130 140 150
>>CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 (197 aa)
initn: 437 init1: 294 opt: 464 Z-score: 593.7 bits: 116.3 E(32554): 9.5e-27
Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (7-148:6-151)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
:. .: . : .:: ::: :... ... : : ..:.: :.::::...::
CCDS14 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
10 20 30 40 50
70 80 90 100 110
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN
.::. :..::.: :::::.:. ::::::.:: : :.:.: ::: ::: :.: ::
CCDS14 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
60 70 80 90 100 110
120 130 140 150
pF1KB8 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
::::: :.. ..: :. ...:: ::. .:
CCDS14 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
120 130 140 150 160 170
CCDS14 KRKASQLVGIEKKFHPDV
180 190
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 460 init1: 460 opt: 460 Z-score: 590.6 bits: 115.3 E(32554): 1.4e-26
Smith-Waterman score: 460; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
CCDS43 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . :: ::. :::
CCDS43 LVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 459 init1: 459 opt: 459 Z-score: 589.3 bits: 115.1 E(32554): 1.7e-26
Smith-Waterman score: 459; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . :: ::. :::
CCDS36 LVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 458 init1: 458 opt: 458 Z-score: 588.1 bits: 114.8 E(32554): 2e-26
Smith-Waterman score: 458; 46.5% identity (72.2% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: : .: .: : .. .....: ::.:::..::.: : . .:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :::::::... : ::::::...::::: . ::::: .:: ::::::
CCDS54 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .:... . . :: ::. :::
CCDS54 LVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 585.5 bits: 114.4 E(32554): 2.7e-26
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 453 init1: 453 opt: 453 Z-score: 581.7 bits: 113.7 E(32554): 4.4e-26
Smith-Waterman score: 453; 45.8% identity (71.5% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: :: :: ..::.: : . .:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::. : :::::::... : ::::::...::::: . ::::: .:: ::::::
CCDS72 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. :.:. .:... . . :: ::. :::
CCDS72 LVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 427 init1: 427 opt: 444 Z-score: 570.3 bits: 111.6 E(32554): 1.9e-25
Smith-Waterman score: 444; 46.4% identity (72.9% similar) in 140 aa overlap (10-149:10-149)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
:: . : .: .: : .. .....: ::.:::..::.: : . .:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
70 80 90 100 110 120
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 (200 aa)
initn: 439 init1: 244 opt: 444 Z-score: 568.3 bits: 111.6 E(32554): 2.5e-25
Smith-Waterman score: 444; 47.9% identity (72.9% similar) in 144 aa overlap (6-148:10-153)
10 20 30 40 50
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLEL
.: .::. . ::.. . : .. :::: :.:.::: ..::.
CCDS33 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 FLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP
.:: ::. :::::.:::.:::.... : ::::::::.:. :. .::::::.::::.:
CCDS33 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
70 80 90 100 110 120
120 130 140 150
pF1KB8 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
.:::: ::.:.: : . .::: :...::
CCDS33 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
130 140 150 160 170 180
CCDS33 VALSSKSWDVETATELLLSN
190 200
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 432 init1: 432 opt: 432 Z-score: 556.7 bits: 108.7 E(32554): 1.1e-24
Smith-Waterman score: 432; 51.7% identity (78.4% similar) in 116 aa overlap (34-149:3-118)
10 20 30 40 50 60
pF1KB8 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP
.....: ::.:::..::.: : . .: .::
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP
10 20 30
70 80 90 100 110 120
pF1KB8 MAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN
. ::: : :.:::::... : ::::::...::::: : ::::: .:: :::::::.
CCDS47 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP
40 50 60 70 80 90
130 140 150
pF1KB8 DVAEQWKTNEAQAIETARAWTRLYAMNNI
..:. .::.. . . :: ::. :::
CCDS47 EIARIYKTDREKYNRIAREWTQKYAM
100 110
152 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:37:53 2016 done: Fri Nov 4 09:37:53 2016
Total Scan time: 1.820 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]