Result of FASTA (omim) for
pF1KB8115
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8115, 400 aa
1>>>pF1KB8115 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1167+/-0.000418; mu= 3.2835+/- 0.026
mean_var=148.5136+/-28.855, 0's: 0 Z-trim(115.3): 24 B-trim: 253 in 1/54
Lambda= 0.105243
statistics sampled from 25682 (25703) to 25682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.301), width: 16
Scan time: 7.440
The best scores are: opt bits E(85289)
XP_011508394 (OMIM: 608692) PREDICTED: golgin-45 i ( 400) 2580 403.7 4.1e-112
NP_001307902 (OMIM: 608692) golgin-45 isoform 1 [H ( 400) 2580 403.7 4.1e-112
NP_003657 (OMIM: 608692) golgin-45 isoform 1 [Homo ( 400) 2580 403.7 4.1e-112
XP_005245618 (OMIM: 608692) PREDICTED: golgin-45 i ( 267) 1687 268.0 1.9e-71
XP_016858134 (OMIM: 608692) PREDICTED: golgin-45 i ( 206) 1172 189.8 5.2e-48
NP_001307901 (OMIM: 608692) golgin-45 isoform 2 [H ( 174) 1004 164.2 2.2e-40
>>XP_011508394 (OMIM: 608692) PREDICTED: golgin-45 isofo (400 aa)
initn: 2580 init1: 2580 opt: 2580 Z-score: 2133.8 bits: 403.7 E(85289): 4.1e-112
Smith-Waterman score: 2580; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KB8 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
310 320 330 340 350 360
370 380 390 400
pF1KB8 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
::::::::::::::::::::::::::::::::::::::::
XP_011 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
370 380 390 400
>>NP_001307902 (OMIM: 608692) golgin-45 isoform 1 [Homo (400 aa)
initn: 2580 init1: 2580 opt: 2580 Z-score: 2133.8 bits: 403.7 E(85289): 4.1e-112
Smith-Waterman score: 2580; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KB8 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
310 320 330 340 350 360
370 380 390 400
pF1KB8 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
::::::::::::::::::::::::::::::::::::::::
NP_001 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
370 380 390 400
>>NP_003657 (OMIM: 608692) golgin-45 isoform 1 [Homo sap (400 aa)
initn: 2580 init1: 2580 opt: 2580 Z-score: 2133.8 bits: 403.7 E(85289): 4.1e-112
Smith-Waterman score: 2580; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KB8 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLAKAVNSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFE
310 320 330 340 350 360
370 380 390 400
pF1KB8 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
::::::::::::::::::::::::::::::::::::::::
NP_003 SSPTTLLATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
370 380 390 400
>>XP_005245618 (OMIM: 608692) PREDICTED: golgin-45 isofo (267 aa)
initn: 1711 init1: 1687 opt: 1687 Z-score: 1403.8 bits: 268.0 E(85289): 1.9e-71
Smith-Waterman score: 1687; 99.6% identity (100.0% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KB8 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RDAHGAIQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNH
::::::::::::::::::::::::::.
XP_005 RDAHGAIQDLLSEREQFRQEMIATQKF
250 260
>>XP_016858134 (OMIM: 608692) PREDICTED: golgin-45 isofo (206 aa)
initn: 1172 init1: 1172 opt: 1172 Z-score: 982.9 bits: 189.8 E(85289): 5.2e-48
Smith-Waterman score: 1172; 97.3% identity (98.4% similar) in 184 aa overlap (217-400:23-206)
190 200 210 220 230 240
pF1KB8 LILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQNRDAHGA
:. .::::::::::::::::::::::::
XP_016 MYWKSSRILKEGYYRTKKVFQTSSVYRQRVMADELTNSRAALQRQNRDAHGA
10 20 30 40 50
250 260 270 280 290 300
pF1KB8 IQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNHKLAKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQDLLSEREQFRQEMIATQKLLEELLVSLQWGREQTYSPSVQPHSTAELALTNHKLAKAV
60 70 80 90 100 110
310 320 330 340 350 360
pF1KB8 NSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFESSPTTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSHLLGNVGINNQKKIPSTVEFCSTPAEKMAETVLRILDPVTCKESSPDNPFFESSPTTL
120 130 140 150 160 170
370 380 390 400
pF1KB8 LATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
::::::::::::::::::::::::::::::::::
XP_016 LATKKNIGRFHPYTRYENITFNCCNHCRGELIAL
180 190 200
>>NP_001307901 (OMIM: 608692) golgin-45 isoform 2 [Homo (174 aa)
initn: 1022 init1: 1004 opt: 1004 Z-score: 846.2 bits: 164.2 E(85289): 2.2e-40
Smith-Waterman score: 1004; 98.8% identity (98.8% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB8 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTKNLETKVTVTSSPIRGAGDGMETEEPPKSVEVTSGVQSRKHHSLQSPWKKAVPSESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLQLGKMLTEKAMEVKAVRILVPKAAITHDIPNKNTKVKSLGHHKGEFLGQSEGVIEPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVNRELKKLLVASVGDDLQYHFERL
::::::::::::::::::::::::::::::::::::: : :
NP_001 KELSEVKNVLEKLKNSERRLLQDKEGLSNQLRVQTEVRRALIDKMSTTLYVWTF
130 140 150 160 170
190 200 210 220 230 240
pF1KB8 AREKNQLILENEALGRNTAQLSEQLERMSIQCDVWRSKFLASRVMADELTNSRAALQRQN
400 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:39:08 2016 done: Fri Nov 4 09:39:09 2016
Total Scan time: 7.440 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]