FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8119, 220 aa
  1>>>pF1KB8119 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1096+/-0.000567; mu= 15.5758+/- 0.034
 mean_var=67.2888+/-13.403, 0's: 0 Z-trim(113.4): 7  B-trim: 0 in 0/50
 Lambda= 0.156352
 statistics sampled from 14024 (14030) to 14024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.431), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS1262.1 CREG1 gene_id:8804|Hs108|chr1           ( 220) 1485 342.8 9.8e-95
CCDS2052.1 CREG2 gene_id:200407|Hs108|chr2         ( 290)  511 123.2 1.7e-28


>>CCDS1262.1 CREG1 gene_id:8804|Hs108|chr1                (220 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1814.3  bits: 342.8 E(32554): 9.8e-95
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KB8 MAGLSRGSARALLAALLASTLLALLVSPARGRGGRDHGDWDEASRLPPLPPREDAARVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAGLSRGSARALLAALLASTLLALLVSPARGRGGRDHGDWDEASRLPPLPPREDAARVAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKT
              130       140       150       160       170       180

              190       200       210       220
pF1KB8 WPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTVQ
       ::::::::::::::::::::::::::::::::::::::::
CCDS12 WPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTVQ
              190       200       210       220

>>CCDS2052.1 CREG2 gene_id:200407|Hs108|chr2              (290 aa)
 initn: 523 init1: 495 opt: 511  Z-score: 625.2  bits: 123.2 E(32554): 1.7e-28
Smith-Waterman score: 511; 40.2% identity (74.0% similar) in 169 aa overlap (47-215:117-283)

         20        30        40        50        60        70      
pF1KB8 LASTLLALLVSPARGRGGRDHGDWDEASRLPPLPPREDAARVARFVTHVSDWGALATIST
                                     ::  ::  :: .:: ..:.: :: :::.::
CCDS20 PRAGAARARPPPAPPGMFSYRREGGQTASAPP-GPRLRAA-TARSLAHASVWGCLATVST
         90       100       110        120        130       140    

         80        90       100       110       120       130      
pF1KB8 LEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCK
        . ..: ::.. : .:::: . ..:.:.::..  .  :..:..::.:.: .  .. .::.
CCDS20 HKKIQGLPFGNCLPVSDGPFNNSTGIPFFYMTAKDPVVADLMKNPMASLMLPESEGEFCR
          150       160       170       180       190       200    

        140       150       160       170       180       190      
pF1KB8 KHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITN
       :.  ::..: ::.. :.: .  :.  :...::...: ::: :. :: ...::: :. : .
CCDS20 KNIVDPEDPRCVQLTLTGQMIAVSPEEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEH
          210       220       230       240       250       260    

        200       210       220  
pF1KB8 IWVLDYFGGPKIVTPEEYYNVTVQ  
       ::.  ..:: . .. :::.       
CCDS20 IWLQKWYGGASSISREEYFKAVPRKA
          270       280       290




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:41:37 2016 done: Fri Nov  4 09:41:38 2016
 Total Scan time:  2.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]