FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8128, 308 aa
  1>>>pF1KB8128 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4250+/-0.000855; mu= 14.1432+/- 0.051
 mean_var=56.0545+/-11.456, 0's: 0 Z-trim(105.2): 24  B-trim: 0 in 0/48
 Lambda= 0.171305
 statistics sampled from 8292 (8297) to 8292 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.255), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS10198.1 SPG21 gene_id:51324|Hs108|chr15        ( 308) 2090 524.7 3.5e-149
CCDS45279.1 SPG21 gene_id:51324|Hs108|chr15        ( 281) 1362 344.8 4.7e-95


>>CCDS10198.1 SPG21 gene_id:51324|Hs108|chr15             (308 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2791.8  bits: 524.7 E(32554): 3.5e-149
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
              250       260       270       280       290       300

               
pF1KB8 LGISQEEQ
       ::::::::
CCDS10 LGISQEEQ
               

>>CCDS45279.1 SPG21 gene_id:51324|Hs108|chr15             (281 aa)
 initn: 1362 init1: 1362 opt: 1362  Z-score: 1820.1  bits: 344.8 E(32554): 4.7e-95
Smith-Waterman score: 1822; 91.2% identity (91.2% similar) in 308 aa overlap (1-308:1-281)

               10        20        30        40        50        60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
       :::::::::::::::                           ::::::::::::::::::
CCDS45 RQILALTGWGYRVIA---------------------------VHLFGASLGGFLAQKFAE
               70                                   80        90   

              130       140       150       160       170       180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
           220       230       240       250       260       270   

               
pF1KB8 LGISQEEQ
       ::::::::
CCDS45 LGISQEEQ
           280 




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:48:08 2016 done: Fri Nov  4 09:48:09 2016
 Total Scan time:  2.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]