Result of FASTA (omim) for
pF1KB8128
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8128, 308 aa
1>>>pF1KB8128 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2029+/-0.000392; mu= 15.5861+/- 0.024
mean_var=61.3166+/-12.650, 0's: 0 Z-trim(111.8): 17 B-trim: 22 in 1/49
Lambda= 0.163789
statistics sampled from 20501 (20510) to 20501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.24), width: 16
Scan time: 6.080
The best scores are: opt bits E(85289)
NP_057714 (OMIM: 248900,608181) maspardin isoform ( 308) 2090 502.6 4.2e-142
XP_005254494 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
XP_016877786 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
XP_016877787 (OMIM: 248900,608181) PREDICTED: masp ( 308) 2090 502.6 4.2e-142
NP_001121361 (OMIM: 248900,608181) maspardin isofo ( 308) 2090 502.6 4.2e-142
NP_001121362 (OMIM: 248900,608181) maspardin isofo ( 281) 1362 330.5 2.4e-90
>>NP_057714 (OMIM: 248900,608181) maspardin isoform a [H (308 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2672.2 bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
250 260 270 280 290 300
pF1KB8 LGISQEEQ
::::::::
NP_057 LGISQEEQ
>>XP_005254494 (OMIM: 248900,608181) PREDICTED: maspardi (308 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2672.2 bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
250 260 270 280 290 300
pF1KB8 LGISQEEQ
::::::::
XP_005 LGISQEEQ
>>XP_016877786 (OMIM: 248900,608181) PREDICTED: maspardi (308 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2672.2 bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
250 260 270 280 290 300
pF1KB8 LGISQEEQ
::::::::
XP_016 LGISQEEQ
>>XP_016877787 (OMIM: 248900,608181) PREDICTED: maspardi (308 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2672.2 bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
250 260 270 280 290 300
pF1KB8 LGISQEEQ
::::::::
XP_016 LGISQEEQ
>>NP_001121361 (OMIM: 248900,608181) maspardin isoform a (308 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 2672.2 bits: 502.6 E(85289): 4.2e-142
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
250 260 270 280 290 300
pF1KB8 LGISQEEQ
::::::::
NP_001 LGISQEEQ
>>NP_001121362 (OMIM: 248900,608181) maspardin isoform b (281 aa)
initn: 1362 init1: 1362 opt: 1362 Z-score: 1743.1 bits: 330.5 E(85289): 2.4e-90
Smith-Waterman score: 1822; 91.2% identity (91.2% similar) in 308 aa overlap (1-308:1-281)
10 20 30 40 50 60
pF1KB8 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAE
::::::::::::::: ::::::::::::::::::
NP_001 RQILALTGWGYRVIA---------------------------VHLFGASLGGFLAQKFAE
70 80 90
130 140 150 160 170 180
pF1KB8 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTHKSPRVHSLILCNSFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGS
220 230 240 250 260 270
pF1KB8 LGISQEEQ
::::::::
NP_001 LGISQEEQ
280
308 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:48:09 2016 done: Fri Nov 4 09:48:10 2016
Total Scan time: 6.080 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]