FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8134, 282 aa
  1>>>pF1KB8134 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1637+/-0.000955; mu= -13.0403+/- 0.058
 mean_var=477.3162+/-96.199, 0's: 0 Z-trim(118.9): 14  B-trim: 0 in 0/56
 Lambda= 0.058704
 statistics sampled from 19957 (19969) to 19957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.852), E-opt: 0.2 (0.613), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS12789.1 ATF5 gene_id:22809|Hs108|chr19         ( 282) 1972 180.1 1.6e-45


>>CCDS12789.1 ATF5 gene_id:22809|Hs108|chr19              (282 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 931.0  bits: 180.1 E(32554): 1.6e-45
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
       ::::::::::::::::::::::::::::::::::::::::::
CCDS12 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
              250       260       270       280  




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:51:42 2016 done: Fri Nov  4 09:51:43 2016
 Total Scan time:  2.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]