FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8134, 282 aa
  1>>>pF1KB8134 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.1687+/-0.000391; mu= -18.9186+/- 0.025
 mean_var=541.3166+/-110.531, 0's: 0 Z-trim(126.7): 9  B-trim: 0 in 0/61
 Lambda= 0.055125
 statistics sampled from 53268 (53290) to 53268 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.861), E-opt: 0.2 (0.625), width:  16
 Scan time:  8.600

The best scores are:                                      opt bits E(85289)
NP_036200 (OMIM: 606398) cyclic AMP-dependent tran ( 282) 1972 170.2 3.9e-42
NP_001180575 (OMIM: 606398) cyclic AMP-dependent t ( 282) 1972 170.2 3.9e-42
NP_001277675 (OMIM: 606398) cyclic AMP-dependent t ( 282) 1972 170.2 3.9e-42
XP_011524931 (OMIM: 606398) PREDICTED: cyclic AMP- ( 282) 1972 170.2 3.9e-42


>>NP_036200 (OMIM: 606398) cyclic AMP-dependent transcri  (282 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 877.4  bits: 170.2 E(85289): 3.9e-42
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
       ::::::::::::::::::::::::::::::::::::::::::
NP_036 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
              250       260       270       280  

>>NP_001180575 (OMIM: 606398) cyclic AMP-dependent trans  (282 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 877.4  bits: 170.2 E(85289): 3.9e-42
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
              250       260       270       280  

>>NP_001277675 (OMIM: 606398) cyclic AMP-dependent trans  (282 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 877.4  bits: 170.2 E(85289): 3.9e-42
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
              250       260       270       280  

>>XP_011524931 (OMIM: 606398) PREDICTED: cyclic AMP-depe  (282 aa)
 initn: 1972 init1: 1972 opt: 1972  Z-score: 877.4  bits: 170.2 E(85289): 3.9e-42
Smith-Waterman score: 1972; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB8 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLGGALEGGLPVGGEPLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMASLLKKELEQMEDFFLDAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQNKSAALRYRQRKRAEGEALEGEC
              190       200       210       220       230       240

              250       260       270       280  
pF1KB8 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
       ::::::::::::::::::::::::::::::::::::::::::
XP_011 QGLEARNRELKERAESVEREIQYVKDLLIEVYKARSQRTRSC
              250       260       270       280  




282 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:51:43 2016 done: Fri Nov  4 09:51:44 2016
 Total Scan time:  8.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]