FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8135, 497 aa
  1>>>pF1KB8135 497 - 497 aa - 497 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3536+/-0.000796; mu= 11.6913+/- 0.049
 mean_var=165.2392+/-32.718, 0's: 0 Z-trim(114.2): 53  B-trim: 0 in 0/54
 Lambda= 0.099774
 statistics sampled from 14700 (14747) to 14700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.453), width:  16
 Scan time:  3.890

The best scores are:                                      opt bits E(32554)
CCDS31327.1 DEAF1 gene_id:10522|Hs108|chr11        ( 565) 3339 492.3 5.8e-139


>>CCDS31327.1 DEAF1 gene_id:10522|Hs108|chr11             (565 aa)
 initn: 3339 init1: 3339 opt: 3339  Z-score: 2608.4  bits: 492.3 E(32554): 5.8e-139
Smith-Waterman score: 3339; 100.0% identity (100.0% similar) in 497 aa overlap (1-497:69-565)

                                             10        20        30
pF1KB8                               MAAEPGHMDMGAEALPGPDEAAAAAAFAEV
                                     ::::::::::::::::::::::::::::::
CCDS31 EPVLSRDEDSEEDADSEAERETPRVTAVAVMAAEPGHMDMGAEALPGPDEAAAAAAFAEV
       40        50        60        70        80        90        

               40        50        60        70        80        90
pF1KB8 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
      100       110       120       130       140       150        

              100       110       120       130       140       150
pF1KB8 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
      160       170       180       190       200       210        

              160       170       180       190       200       210
pF1KB8 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
      220       230       240       250       260       270        

              220       230       240       250       260       270
pF1KB8 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
      280       290       300       310       320       330        

              280       290       300       310       320       330
pF1KB8 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
      340       350       360       370       380       390        

              340       350       360       370       380       390
pF1KB8 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
      400       410       420       430       440       450        

              400       410       420       430       440       450
pF1KB8 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
      460       470       480       490       500       510        

              460       470       480       490       
pF1KB8 HKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV
      520       530       540       550       560     




497 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:12:14 2016 done: Sat Nov  5 02:12:15 2016
 Total Scan time:  3.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]