Result of FASTA (omim) for
pF1KB8137
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8137, 345 aa
1>>>pF1KB8137 345 - 345 aa - 345 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1437+/-0.000303; mu= 13.2911+/- 0.019
mean_var=95.6781+/-19.707, 0's: 0 Z-trim(118.7): 35 B-trim: 88 in 1/54
Lambda= 0.131120
statistics sampled from 31865 (31901) to 31865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.374), width: 16
Scan time: 5.980
The best scores are: opt bits E(85289)
XP_016864310 (OMIM: 603450) PREDICTED: LIM domain- ( 310) 1245 245.3 1.3e-64
XP_016864309 (OMIM: 603450) PREDICTED: LIM domain- ( 311) 1245 245.3 1.3e-64
XP_016864308 (OMIM: 603450) PREDICTED: LIM domain- ( 312) 1245 245.3 1.3e-64
NP_001291364 (OMIM: 603450) LIM domain-binding pro ( 313) 1245 245.3 1.3e-64
XP_005248259 (OMIM: 603450) PREDICTED: LIM domain- ( 329) 1245 245.3 1.4e-64
XP_005248258 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1245 245.3 1.4e-64
XP_016864306 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1245 245.3 1.4e-64
NP_001124306 (OMIM: 603450) LIM domain-binding pro ( 331) 1245 245.3 1.4e-64
XP_016864302 (OMIM: 603450) PREDICTED: LIM domain- ( 370) 1245 245.3 1.5e-64
NP_001291363 (OMIM: 603450) LIM domain-binding pro ( 371) 1245 245.3 1.5e-64
XP_005248254 (OMIM: 603450) PREDICTED: LIM domain- ( 372) 1245 245.3 1.5e-64
NP_001281 (OMIM: 603450) LIM domain-binding protei ( 373) 1245 245.3 1.5e-64
XP_016864311 (OMIM: 603450) PREDICTED: LIM domain- ( 249) 1131 223.7 3.4e-58
XP_011512207 (OMIM: 603450) PREDICTED: LIM domain- ( 298) 1131 223.7 4e-58
XP_016864307 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1131 223.7 4.3e-58
XP_006714038 (OMIM: 603450) PREDICTED: LIM domain- ( 411) 1131 223.8 5.1e-58
XP_016872358 (OMIM: 603451) PREDICTED: LIM domain- ( 242) 937 187.0 3.7e-47
XP_016864305 (OMIM: 603450) PREDICTED: LIM domain- ( 348) 929 185.5 1.4e-46
XP_006714046 (OMIM: 603450) PREDICTED: LIM domain- ( 349) 929 185.5 1.4e-46
XP_016864304 (OMIM: 603450) PREDICTED: LIM domain- ( 350) 929 185.5 1.4e-46
XP_006714045 (OMIM: 603450) PREDICTED: LIM domain- ( 351) 929 185.5 1.4e-46
XP_016864303 (OMIM: 603450) PREDICTED: LIM domain- ( 366) 929 185.6 1.5e-46
XP_006714044 (OMIM: 603450) PREDICTED: LIM domain- ( 367) 929 185.6 1.5e-46
XP_006714043 (OMIM: 603450) PREDICTED: LIM domain- ( 368) 929 185.6 1.5e-46
XP_006714042 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 929 185.6 1.5e-46
XP_006714041 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 929 185.6 1.5e-46
XP_016864301 (OMIM: 603450) PREDICTED: LIM domain- ( 408) 929 185.6 1.6e-46
XP_006714040 (OMIM: 603450) PREDICTED: LIM domain- ( 409) 929 185.6 1.6e-46
XP_006714039 (OMIM: 603450) PREDICTED: LIM domain- ( 410) 929 185.6 1.6e-46
XP_016872357 (OMIM: 603451) PREDICTED: LIM domain- ( 337) 905 181.0 3.2e-45
XP_016872356 (OMIM: 603451) PREDICTED: LIM domain- ( 339) 905 181.0 3.3e-45
NP_003884 (OMIM: 603451) LIM domain-binding protei ( 375) 905 181.0 3.5e-45
NP_001308541 (OMIM: 603451) LIM domain-binding pro ( 409) 905 181.0 3.8e-45
NP_001106878 (OMIM: 603451) LIM domain-binding pro ( 411) 905 181.1 3.8e-45
>>XP_016864310 (OMIM: 603450) PREDICTED: LIM domain-bind (310 aa)
initn: 1940 init1: 1235 opt: 1245 Z-score: 1280.9 bits: 245.3 E(85289): 1.3e-64
Smith-Waterman score: 1749; 89.0% identity (90.0% similar) in 299 aa overlap (1-271:1-298)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_016 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::: ::::::::::::::::::::::::::::::::::::::::::::::::. ..
XP_016 RMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQIASIA
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
XP_016 RSPVSGCALRT
300 310
>>XP_016864309 (OMIM: 603450) PREDICTED: LIM domain-bind (311 aa)
initn: 1890 init1: 1235 opt: 1245 Z-score: 1280.8 bits: 245.3 E(85289): 1.3e-64
Smith-Waterman score: 1766; 89.3% identity (90.3% similar) in 299 aa overlap (1-271:1-299)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_016 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::. ..
XP_016 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQIASIA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
XP_016 RSPVSGCALRT
310
>>XP_016864308 (OMIM: 603450) PREDICTED: LIM domain-bind (312 aa)
initn: 1660 init1: 1235 opt: 1245 Z-score: 1280.8 bits: 245.3 E(85289): 1.3e-64
Smith-Waterman score: 1761; 88.2% identity (89.2% similar) in 305 aa overlap (1-277:1-304)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_016 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_016 RMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPIAS
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. :
XP_016 IARSPVSGCALRT
300 310
>>NP_001291364 (OMIM: 603450) LIM domain-binding protein (313 aa)
initn: 1307 init1: 1235 opt: 1245 Z-score: 1280.8 bits: 245.3 E(85289): 1.3e-64
Smith-Waterman score: 1778; 88.5% identity (89.5% similar) in 305 aa overlap (1-277:1-305)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
NP_001 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
NP_001 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPIAS
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. :
NP_001 IARSPVSGCALRT
310
>>XP_005248259 (OMIM: 603450) PREDICTED: LIM domain-bind (329 aa)
initn: 1307 init1: 1235 opt: 1245 Z-score: 1280.5 bits: 245.3 E(85289): 1.4e-64
Smith-Waterman score: 1762; 86.3% identity (88.2% similar) in 314 aa overlap (1-286:1-312)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_005 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_005 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--GLG
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. . .: :. ::
XP_005 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
300 310 320
>>XP_005248258 (OMIM: 603450) PREDICTED: LIM domain-bind (330 aa)
initn: 1660 init1: 1235 opt: 1245 Z-score: 1280.5 bits: 245.3 E(85289): 1.4e-64
Smith-Waterman score: 1774; 86.6% identity (88.5% similar) in 314 aa overlap (1-286:1-313)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_005 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_005 RMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. . .: :. ::
XP_005 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
300 310 320 330
>>XP_016864306 (OMIM: 603450) PREDICTED: LIM domain-bind (330 aa)
initn: 1660 init1: 1235 opt: 1245 Z-score: 1280.5 bits: 245.3 E(85289): 1.4e-64
Smith-Waterman score: 1774; 86.6% identity (88.5% similar) in 314 aa overlap (1-286:1-313)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_016 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::: .
XP_016 RMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. . .: :. ::
XP_016 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
300 310 320 330
>>NP_001124306 (OMIM: 603450) LIM domain-binding protein (331 aa)
initn: 1307 init1: 1235 opt: 1245 Z-score: 1280.4 bits: 245.3 E(85289): 1.4e-64
Smith-Waterman score: 1791; 86.9% identity (88.9% similar) in 314 aa overlap (1-286:1-314)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
NP_001 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
NP_001 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. . .: :. ::
NP_001 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
310 320 330
>>XP_016864302 (OMIM: 603450) PREDICTED: LIM domain-bind (370 aa)
initn: 2138 init1: 1235 opt: 1245 Z-score: 1279.7 bits: 245.3 E(85289): 1.5e-64
Smith-Waterman score: 2251; 91.7% identity (91.7% similar) in 373 aa overlap (1-345:1-370)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
XP_016 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
:::::: :::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_016 RMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--DVM
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
300 310 320 330 340 350
340
pF1KB8 ETKSENPPPQASQ
:::::::::::::
XP_016 ETKSENPPPQASQ
360 370
>>NP_001291363 (OMIM: 603450) LIM domain-binding protein (371 aa)
initn: 1749 init1: 1235 opt: 1245 Z-score: 1279.7 bits: 245.3 E(85289): 1.5e-64
Smith-Waterman score: 2268; 92.0% identity (92.0% similar) in 373 aa overlap (1-345:1-371)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
NP_001 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_001 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--DVM
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
300 310 320 330 340 350
340
pF1KB8 ETKSENPPPQASQ
:::::::::::::
NP_001 ETKSENPPPQASQ
360 370
345 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:52:58 2016 done: Fri Nov 4 09:52:59 2016
Total Scan time: 5.980 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]