FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8138, 593 aa
  1>>>pF1KB8138 593 - 593 aa - 593 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3458+/-0.00122; mu= 16.3028+/- 0.073
 mean_var=185.9180+/-34.494, 0's: 0 Z-trim(109.7): 122  B-trim: 5 in 1/51
 Lambda= 0.094062
 statistics sampled from 10926 (11050) to 10926 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.339), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS11483.1 GRN gene_id:2896|Hs108|chr17           ( 593) 4654 644.7 9.9e-185


>>CCDS11483.1 GRN gene_id:2896|Hs108|chr17                (593 aa)
 initn: 4654 init1: 4654 opt: 4654  Z-score: 3430.0  bits: 644.7 E(32554): 9.9e-185
Smith-Waterman score: 4654; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KB8 MWTLVSWVALTAGLVAGTRCPDGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MWTLVSWVALTAGLVAGTRCPDGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 CCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQG
              490       500       510       520       530       540

              550       560       570       580       590   
pF1KB8 WACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQLL
              550       560       570       580       590   




593 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:54:15 2016 done: Fri Nov  4 09:54:16 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]