Result of FASTA (ccds) for
pF1KB8141
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8141, 136 aa
1>>>pF1KB8141 136 - 136 aa - 136 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0019+/-0.000755; mu= 13.8173+/- 0.046
mean_var=68.6565+/-13.806, 0's: 0 Z-trim(108.9): 25 B-trim: 233 in 1/48
Lambda= 0.154787
statistics sampled from 10491 (10514) to 10491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.323), width: 16
Scan time: 1.360
The best scores are: opt bits E(32554)
CCDS1550.1 H3F3A gene_id:3020|Hs108|chr1 ( 136) 863 200.8 2.2e-52
CCDS11729.1 H3F3B gene_id:3021|Hs108|chr17 ( 136) 863 200.8 2.2e-52
CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 ( 136) 843 196.3 4.8e-51
CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 ( 136) 843 196.3 4.8e-51
CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 ( 136) 843 196.3 4.8e-51
CCDS4602.1 HIST1H3G gene_id:8355|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4573.1 HIST1H3B gene_id:8358|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4590.1 HIST1H3D gene_id:8351|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4596.1 HIST1H3E gene_id:8353|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4638.1 HIST1H3J gene_id:8356|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4636.1 HIST1H3I gene_id:8354|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4576.1 HIST1H3C gene_id:8352|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS4627.1 HIST1H3H gene_id:8357|Hs108|chr6 ( 136) 837 195.0 1.2e-50
CCDS1572.1 HIST3H3 gene_id:8290|Hs108|chr1 ( 136) 819 191.0 2e-49
CCDS31769.1 H3F3C gene_id:440093|Hs108|chr12 ( 135) 815 190.1 3.7e-49
CCDS1729.1 CENPA gene_id:1058|Hs108|chr2 ( 140) 373 91.4 1.9e-19
>>CCDS1550.1 H3F3A gene_id:3020|Hs108|chr1 (136 aa)
initn: 863 init1: 863 opt: 863 Z-score: 1054.0 bits: 200.8 E(32554): 2.2e-52
Smith-Waterman score: 863; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS15 MPKDIQLARRIRGERA
130
>>CCDS11729.1 H3F3B gene_id:3021|Hs108|chr17 (136 aa)
initn: 863 init1: 863 opt: 863 Z-score: 1054.0 bits: 200.8 E(32554): 2.2e-52
Smith-Waterman score: 863; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS11 MPKDIQLARRIRGERA
130
>>CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 (136 aa)
initn: 843 init1: 843 opt: 843 Z-score: 1029.9 bits: 196.3 E(32554): 4.8e-51
Smith-Waterman score: 843; 97.1% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS30 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. :::::::::::::::::::::::::::::
CCDS30 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS30 MPKDIQLARRIRGERA
130
>>CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 (136 aa)
initn: 843 init1: 843 opt: 843 Z-score: 1029.9 bits: 196.3 E(32554): 4.8e-51
Smith-Waterman score: 843; 97.1% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS41 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. :::::::::::::::::::::::::::::
CCDS41 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS41 MPKDIQLARRIRGERA
130
>>CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 (136 aa)
initn: 843 init1: 843 opt: 843 Z-score: 1029.9 bits: 196.3 E(32554): 4.8e-51
Smith-Waterman score: 843; 97.1% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS30 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. :::::::::::::::::::::::::::::
CCDS30 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS30 MPKDIQLARRIRGERA
130
>>CCDS4602.1 HIST1H3G gene_id:8355|Hs108|chr6 (136 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1022.6 bits: 195.0 E(32554): 1.2e-50
Smith-Waterman score: 837; 96.3% identity (98.5% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. ::::: :::::::::::::::::::::::
CCDS46 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS46 MPKDIQLARRIRGERA
130
>>CCDS4573.1 HIST1H3B gene_id:8358|Hs108|chr6 (136 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1022.6 bits: 195.0 E(32554): 1.2e-50
Smith-Waterman score: 837; 96.3% identity (98.5% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. ::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 (136 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1022.6 bits: 195.0 E(32554): 1.2e-50
Smith-Waterman score: 837; 96.3% identity (98.5% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. ::::: :::::::::::::::::::::::
CCDS46 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS46 MPKDIQLARRIRGERA
130
>>CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 (136 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1022.6 bits: 195.0 E(32554): 1.2e-50
Smith-Waterman score: 837; 96.3% identity (98.5% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. ::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4590.1 HIST1H3D gene_id:8351|Hs108|chr6 (136 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1022.6 bits: 195.0 E(32554): 1.2e-50
Smith-Waterman score: 837; 96.3% identity (98.5% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB8 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::.:. ::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB8 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
136 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:57:02 2016 done: Fri Nov 4 09:57:03 2016
Total Scan time: 1.360 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]