FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8144, 269 aa
  1>>>pF1KB8144 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4120+/-0.000934; mu= 7.5398+/- 0.056
 mean_var=202.5941+/-41.310, 0's: 0 Z-trim(113.3): 31  B-trim: 0 in 0/51
 Lambda= 0.090107
 statistics sampled from 13955 (13969) to 13955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS5625.1 GATAD1 gene_id:57798|Hs108|chr7         ( 269) 1835 250.4   1e-66


>>CCDS5625.1 GATAD1 gene_id:57798|Hs108|chr7              (269 aa)
 initn: 1835 init1: 1835 opt: 1835  Z-score: 1311.4  bits: 250.4 E(32554): 1e-66
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB8 MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGAGSGAAGGTGGSGGGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGAGSGAAGGTGGSGGGGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKSRSSPFPTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKSRSSPFPTV
              190       200       210       220       230       240

              250       260         
pF1KB8 PTRPEKGYIWTHVGPTPAITIKESVANHL
       :::::::::::::::::::::::::::::
CCDS56 PTRPEKGYIWTHVGPTPAITIKESVANHL
              250       260         




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:24:23 2016 done: Sat Nov  5 21:24:23 2016
 Total Scan time:  2.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]