FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8144, 269 aa
  1>>>pF1KB8144 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3171+/-0.000359; mu= 7.6151+/- 0.022
 mean_var=195.0833+/-40.567, 0's: 0 Z-trim(120.6): 30  B-trim: 864 in 1/56
 Lambda= 0.091826
 statistics sampled from 35991 (36074) to 35991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.423), width:  16
 Scan time:  7.870

The best scores are:                                      opt bits E(85289)
NP_066990 (OMIM: 614518,614672) GATA zinc finger d ( 269) 1835 254.9 1.2e-67


>>NP_066990 (OMIM: 614518,614672) GATA zinc finger domai  (269 aa)
 initn: 1835 init1: 1835 opt: 1835  Z-score: 1335.7  bits: 254.9 E(85289): 1.2e-67
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB8 MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGAGSGAAGGTGGSGGGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MPLGLKPTCSVCKTTSSSMWKKGAQGEILCHHCTGRGGAGSGGAGSGAAGGTGGSGGGGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKSRSSPFPTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 KSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKSRSSPFPTV
              190       200       210       220       230       240

              250       260         
pF1KB8 PTRPEKGYIWTHVGPTPAITIKESVANHL
       :::::::::::::::::::::::::::::
NP_066 PTRPEKGYIWTHVGPTPAITIKESVANHL
              250       260         




269 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:24:24 2016 done: Sat Nov  5 21:24:25 2016
 Total Scan time:  7.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]