FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8145, 308 aa
  1>>>pF1KB8145 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5511+/-0.000872; mu= 7.0529+/- 0.053
 mean_var=159.9177+/-31.202, 0's: 0 Z-trim(112.3): 13  B-trim: 0 in 0/53
 Lambda= 0.101421
 statistics sampled from 13049 (13054) to 13049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.401), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS11726.1 SAP30BP gene_id:29115|Hs108|chr17      ( 308) 1973 300.0 1.5e-81
CCDS77115.1 SAP30BP gene_id:29115|Hs108|chr17      ( 292) 1448 223.2 1.9e-58


>>CCDS11726.1 SAP30BP gene_id:29115|Hs108|chr17           (308 aa)
 initn: 1973 init1: 1973 opt: 1973  Z-score: 1577.5  bits: 300.0 E(32554): 1.5e-81
Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB8 MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGSAAEEKGGLVSDAYGEDDFSRLGGDEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGSAAEEKGGLVSDAYGEDDFSRLGGDEDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YEEEEDENSRQSEDDDSETEKPEADDPKDNTEAEKRDPQELVASFSERVRNMSPDEIKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YEEEEDENSRQSEDDDSETEKPEADDPKDNTEAEKRDPQELVASFSERVRNMSPDEIKIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATSTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATSTTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVG
              250       260       270       280       290       300

               
pF1KB8 TIVKKAKQ
       ::::::::
CCDS11 TIVKKAKQ
               

>>CCDS77115.1 SAP30BP gene_id:29115|Hs108|chr17           (292 aa)
 initn: 1433 init1: 1433 opt: 1448  Z-score: 1162.7  bits: 223.2 E(32554): 1.9e-58
Smith-Waterman score: 1820; 94.8% identity (94.8% similar) in 308 aa overlap (1-308:1-292)

               10        20        30        40        50        60
pF1KB8 MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGSAAEEKGGLVSDAYGEDDFSRLGGDEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGSAAEEKGGLVSDAYGEDDFSRLGGDEDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YEEEEDENSRQSEDDDSETEKPEADDPKDNTEAEKRDPQELVASFSERVRNMSPDEIKIP
       ::::::::::::                ::::::::::::::::::::::::::::::::
CCDS77 YEEEEDENSRQS----------------DNTEAEKRDPQELVASFSERVRNMSPDEIKIP
               70                        80        90       100    

              130       140       150       160       170       180
pF1KB8 PEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTN
          110       120       130       140       150       160    

              190       200       210       220       230       240
pF1KB8 YPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATSTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATSTTT
          170       180       190       200       210       220    

              250       260       270       280       290       300
pF1KB8 TTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVG
          230       240       250       260       270       280    

               
pF1KB8 TIVKKAKQ
       ::::::::
CCDS77 TIVKKAKQ
          290  




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:59:02 2016 done: Fri Nov  4 09:59:02 2016
 Total Scan time:  1.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]