FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8151, 304 aa
  1>>>pF1KB8151 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2332+/-0.000827; mu= -0.3633+/- 0.050
 mean_var=246.8389+/-52.566, 0's: 0 Z-trim(115.9): 32  B-trim: 0 in 0/53
 Lambda= 0.081633
 statistics sampled from 16425 (16449) to 16425 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.505), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS11002.1 CRK gene_id:1398|Hs108|chr17           ( 304) 2088 258.0 6.3e-69
CCDS45561.1 CRK gene_id:1398|Hs108|chr17           ( 204) 1378 174.3 6.9e-44
CCDS13785.1 CRKL gene_id:1399|Hs108|chr22          ( 303)  642 87.7 1.2e-17


>>CCDS11002.1 CRK gene_id:1398|Hs108|chr17                (304 aa)
 initn: 2088 init1: 2088 opt: 2088  Z-score: 1351.0  bits: 258.0 E(32554): 6.3e-69
Smith-Waterman score: 2088; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB8 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 MIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPD
              250       260       270       280       290       300

           
pF1KB8 EDFS
       ::::
CCDS11 EDFS
           

>>CCDS45561.1 CRK gene_id:1398|Hs108|chr17                (204 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 901.4  bits: 174.3 E(32554): 6.9e-44
Smith-Waterman score: 1378; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 MIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA
       :::::::::::::::::::::::                                     
CCDS45 MIPVPYVEKYRPASASVSALIGGR                                    
              190       200                                        

>>CCDS13785.1 CRKL gene_id:1399|Hs108|chr22               (303 aa)
 initn: 1223 init1: 403 opt: 642  Z-score: 430.6  bits: 87.7 E(32554): 1.2e-17
Smith-Waterman score: 1135; 57.5% identity (73.8% similar) in 320 aa overlap (5-302:6-302)

                10        20        30        40        50         
pF1KB8  MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSH
            ::: .::.:: : .::::: . :::::::.:::::::: ::::::::::::::::
CCDS13 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS
       :::::   :                 :..::::::: :::::::::::::::::::::. 
CCDS13 YIINSLPNR-----------------RFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAP
                                70        80        90       100   

     120              130       140       150       160       170  
pF1KB8 R-------SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA
       :       : .. ..   ... ::::.:.:: ::: ::::::::.:: : .:::::::.:
CCDS13 RYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSA
           110       120       130       140       150       160   

            180       190       200       210        220       230 
pF1KB8 EDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPG-PYAQPSVNTPLP
       ....:. ::::::::::   .:        :.. . . .  : :::.  ::::...::::
CCDS13 RNKDGRVGMIPVPYVEKLVRSSPH------GKHGNRNSNSYGIPEPAHAYAQPQTTTPLP
           170       180             190       200       210       

                           240       250       260       270       
pF1KB8 NL--------------QNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEG
        .              ::::..:..:::::: ::::::::::::..::::..:..:::::
CCDS13 AVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEG
       220       230       240       250       260       270       

       280       290       300    
pF1KB8 ECNGKRGHFPFTHVRLLDQQNPDEDFS
       : ::..: ::::::...: :::::.  
CCDS13 EVNGRKGLFPFTHVKIFDPQNPDENE 
       280       290       300    




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:54:03 2016 done: Fri Nov  4 19:54:04 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]