FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8157, 549 aa
  1>>>pF1KB8157 549 - 549 aa - 549 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7878+/-0.000927; mu= 8.2863+/- 0.056
 mean_var=149.7884+/-29.376, 0's: 0 Z-trim(110.8): 16  B-trim: 0 in 0/51
 Lambda= 0.104794
 statistics sampled from 11872 (11881) to 11872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.365), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS2861.1 GNL3 gene_id:26354|Hs108|chr3           ( 549) 3571 551.7 8.2e-157
CCDS43100.1 GNL3 gene_id:26354|Hs108|chr3          ( 537) 3495 540.2 2.3e-153
CCDS14360.1 GNL3L gene_id:54552|Hs108|chrX         ( 582)  970 158.5 2.1e-38


>>CCDS2861.1 GNL3 gene_id:26354|Hs108|chr3                (549 aa)
 initn: 3571 init1: 3571 opt: 3571  Z-score: 2928.7  bits: 551.7 E(32554): 8.2e-157
Smith-Waterman score: 3571; 99.5% identity (100.0% similar) in 549 aa overlap (1-549:1-549)

               10        20        30        40        50        60
pF1KB8 MKRPKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKQGHKKPRKDPGVPNSAPFKEAL
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS28 MKRPKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKRGHKKPRKDPGVPNSAPFKEAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LREAELRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LREAELRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 SGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 DLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 WKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 WKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVVLKYTVPGYRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 ITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVVLKYTVPGYRN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SLEFFTMLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIV
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 SLEFFTVLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 VDMKSGFNLEELEKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VDMKSGFNLEELEKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 QEEREDDKDSDQETVDEEVDENSSGMFAAEETGEALSEETTAGQQSTRSFILDKIIEEDD
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS28 QEEREDDKDSDQETVDEEVDENSSGMFAAEETGEALSEETTAGEQSTRSFILDKIIEEDD
              490       500       510       520       530       540

                
pF1KB8 AYDFSTDYV
       :::::::::
CCDS28 AYDFSTDYV
                

>>CCDS43100.1 GNL3 gene_id:26354|Hs108|chr3               (537 aa)
 initn: 3495 init1: 3495 opt: 3495  Z-score: 2866.8  bits: 540.2 E(32554): 2.3e-153
Smith-Waterman score: 3495; 99.4% identity (100.0% similar) in 537 aa overlap (13-549:1-537)

               10        20        30        40        50        60
pF1KB8 MKRPKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKQGHKKPRKDPGVPNSAPFKEAL
                   ::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS43             MTCHKRYKIQKKVREHHRKLRKEAKKRGHKKPRKDPGVPNSAPFKEAL
                           10        20        30        40        

               70        80        90       100       110       120
pF1KB8 LREAELRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LREAELRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAK
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB8 SGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKS
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KB8 DLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGL
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KB8 WKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSMQVVPLDKQ
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KB8 ITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVVLKYTVPGYRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVVLKYTVPGYRN
      290       300       310       320       330       340        

              370       380       390       400       410       420
pF1KB8 SLEFFTMLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIV
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLEFFTVLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIV
      350       360       370       380       390       400        

              430       440       450       460       470       480
pF1KB8 VDMKSGFNLEELEKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VDMKSGFNLEELEKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERK
      410       420       430       440       450       460        

              490       500       510       520       530       540
pF1KB8 QEEREDDKDSDQETVDEEVDENSSGMFAAEETGEALSEETTAGQQSTRSFILDKIIEEDD
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS43 QEEREDDKDSDQETVDEEVDENSSGMFAAEETGEALSEETTAGEQSTRSFILDKIIEEDD
      470       480       490       500       510       520        

                
pF1KB8 AYDFSTDYV
       :::::::::
CCDS43 AYDFSTDYV
      530       

>>CCDS14360.1 GNL3L gene_id:54552|Hs108|chrX              (582 aa)
 initn: 887 init1: 384 opt: 970  Z-score: 803.1  bits: 158.5 E(32554): 2.1e-38
Smith-Waterman score: 970; 37.5% identity (69.8% similar) in 437 aa overlap (16-443:6-441)

               10        20        30           40        50       
pF1KB8 MKRPKLKKASKRMTCHKRYKIQKKVREHHR---KLRKEAKKQGHKKPRKDPGVPNSAPFK
                      ::  :  .  . :..      . ::..:.:   : :..:. .  .
CCDS14           MMKLRHKNKKPGEGSKGHKKISWPYPQPAKQNGKKATSKVPSAPHFVHPN
                         10        20        30        40        50

        60        70        80        90        100       110      
pF1KB8 EALLREAELRKQRLEELKQQQKLDRQKELEKKRKLETN-PDIKPSNVEPMEKEFGLCKTE
       .   :::::.:. .::....:.  :..: .:.: .:.   :.   . :  .::  : . .
CCDS14 DHANREAELKKKWVEEMREKQQAAREQERQKRRTIESYCQDVLRRQEEFEHKEEVLQELN
               60        70        80        90       100       110

        120       130       140       150       160        170     
pF1KB8 NKAKSGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQS-GQKKLVL
          .   . ..: : .:..::.: :::.:::::::::::::: :.:::.... :.:::::
CCDS14 MFPQLDDEATRKAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVL
              120       130       140       150       160       170

         180       190       200       210       220        230    
pF1KB8 ILNKSDLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPF-RSEVC
       .::: :::::: .:.::.::..:::::.:.:::. . :.     : . . .  . .:..:
CCDS14 VLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKAC
              180       190       200       210       220       230

          240       250         260       270       280       290  
pF1KB8 FGKEGLWKLLGGFQET--CSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSM
       :: :.: ..::.. .       :::::.:.:::::::.:::::. . :.::.  :.:. :
CCDS14 FGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFM
              240       250       260       270       280       290

            300       310       320        330       340       350 
pF1KB8 QVVPLDKQITIIDSPSFIVSPLNSSSALALRSPASIE-VVKPMEAASAILSQADARQVVL
       : : ::: : ..:.:... .: ::  .  ::. . .. .. :.  . .::.. . ...  
CCDS14 QEVYLDKFIRLLDAPGIVPGP-NSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISN
              300       310        320       330       340         

             360       370       380       390       400       410 
pF1KB8 KYTVPGYRNSLEFFTMLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTP
        : : :.... .:.: .:.: : ..:::. . : ::: . ..:.......:  ::.. : 
CCDS14 YYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPATHTL
     350       360       370       380       390       400         

             420       430       440       450       460       470 
pF1KB8 PPYFNESIVVDMKSGFNLEELEKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHE
       : ...  :: .:   :..:. :. : .... .                            
CCDS14 PTHLSAEIVKEMTEVFDIEDTEQANEDTMECLATGESDELLGDTDPLEMEIKLLHSPMTK
     410       420       430       440       450       460         

             480       490       500       510       520       530 
pF1KB8 ELPKRKERKQEEREDDKDSDQETVDEEVDENSSGMFAAEETGEALSEETTAGQQSTRSFI
                                                                   
CCDS14 IADAIENKTTVYKIGDLTGYCTNPNRHQMGWAKRNVDHRPKSNSMVDVCSVDRRSVLQRI
     470       480       490       500       510       520         




549 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:05:09 2016 done: Fri Nov  4 10:05:10 2016
 Total Scan time:  3.240 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]