FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8163, 123 aa
  1>>>pF1KB8163 123 - 123 aa - 123 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3578+/-0.000267; mu= 16.0477+/- 0.017
 mean_var=56.1002+/-11.081, 0's: 0 Z-trim(119.5): 3  B-trim: 0 in 0/51
 Lambda= 0.171235
 statistics sampled from 33677 (33680) to 33677 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.395), width:  16
 Scan time:  4.530

The best scores are:                                      opt bits E(85289)
NP_002862 (OMIM: 603417) guanine nucleotide exchan ( 123)  858 218.9 1.7e-57


>>NP_002862 (OMIM: 603417) guanine nucleotide exchange f  (123 aa)
 initn: 858 init1: 858 opt: 858  Z-score: 1153.3  bits: 218.9 E(85289): 1.7e-57
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB8 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERV
               70        80        90       100       110       120

          
pF1KB8 SHE
       :::
NP_002 SHE
          




123 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:09:11 2016 done: Fri Nov  4 10:09:12 2016
 Total Scan time:  4.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]