Result of FASTA (ccds) for
pF1KB8174
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8174, 563 aa
1>>>pF1KB8174 563 - 563 aa - 563 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6769+/-0.00101; mu= 3.7183+/- 0.061
mean_var=172.0862+/-34.641, 0's: 0 Z-trim(109.4): 25 B-trim: 0 in 0/53
Lambda= 0.097769
statistics sampled from 10844 (10861) to 10844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.334), width: 16
Scan time: 2.240
The best scores are: opt bits E(32554)
CCDS328.1 GMEB1 gene_id:10691|Hs108|chr1 ( 563) 3613 522.0 7.4e-148
CCDS327.1 GMEB1 gene_id:10691|Hs108|chr1 ( 573) 3336 483.0 4.3e-136
CCDS13528.1 GMEB2 gene_id:26205|Hs108|chr20 ( 530) 695 110.4 5.5e-24
>>CCDS328.1 GMEB1 gene_id:10691|Hs108|chr1 (563 aa)
initn: 3613 init1: 3613 opt: 3613 Z-score: 2768.0 bits: 522.0 E(32554): 7.4e-148
Smith-Waterman score: 3613; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KB8 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 FGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 VSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 SSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 MVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEE
490 500 510 520 530 540
550 560
pF1KB8 KVVAEMEEHQHQVHNVEIVVLED
:::::::::::::::::::::::
CCDS32 KVVAEMEEHQHQVHNVEIVVLED
550 560
>>CCDS327.1 GMEB1 gene_id:10691|Hs108|chr1 (573 aa)
initn: 3336 init1: 3336 opt: 3336 Z-score: 2556.8 bits: 483.0 E(32554): 4.3e-136
Smith-Waterman score: 3583; 98.3% identity (98.3% similar) in 573 aa overlap (1-563:1-573)
10 20 30 40 50
pF1KB8 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQG----------IYEAGSE
::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS32 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGLFIDGHFYNRIYEAGSE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 NNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 VKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 TKFDLLISSARAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TKFDLLISSARAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 TEEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTD
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 AAVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AAVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 NIPVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NIPVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQ
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 DGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAV
490 500 510 520 530 540
540 550 560
pF1KB8 ILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
:::::::::::::::::::::::::::::::::
CCDS32 ILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
550 560 570
>>CCDS13528.1 GMEB2 gene_id:26205|Hs108|chr20 (530 aa)
initn: 1232 init1: 602 opt: 695 Z-score: 544.0 bits: 110.4 E(32554): 5.5e-24
Smith-Waterman score: 1254; 41.2% identity (70.5% similar) in 539 aa overlap (1-521:1-512)
10 20 30 40 50
pF1KB8 MANAEVSVPVGDVVVV--PTEGNEGENPEDTKTQVIL-QLQPVQQGIYEAG--SENNTAV
::. .::: . .:::: : . .: . : .:: .. .: : . : . .:: .:.
CCDS13 MATPDVSVHMEEVVVVTTPDTAVDGSGVEGVKTVLVTTNLAPHGGDLTEDNMETENAAAA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 VAVETHTIHKIEEGIDTGTIEANEDME--IAYPITCGESKAILLWKKFVCPGINVKCVKF
.:. . ...:.. . : .:..: :.::::::.:.: :.:.::::::::::::..
CCDS13 AAAAFTASSQLKEAVLVKMAEEGENLEAEIVYPITCGDSRANLIWRKFVCPGINVKCVQY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 NDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKF
....::::.::::::::::::::::::..::::::.::::..:::::::::::::::::.
CCDS13 DEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGELDFYQHDKVCSNTCRSTKI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DLLISSARAPV--PGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMAT
:: :.::. . : . . ::..:: . . .:. :. :. : .:..:
CCDS13 DL--SGARVSLSSPTSAEYIPLTPAAADVNGSPATITIETCEDPG-DWTAA---------
190 200 210 220
240 250 260 270 280 290
pF1KB8 EEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDA
:..::. ::.:. :.::..::. ....:. : .::.:::. . :.:. ::
CCDS13 ----------IGDDTFTFWRGLKDAGLLDEVIQEFHQELVETMRGLQQRVQDPPLQLRDA
230 240 250 260 270
300 310 320 330 340 350
pF1KB8 AVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQ
..:::....::..: ::::: ... :.....::. :. ::.: .:....... . :::
CCDS13 VLLNNIVQNFGMLDLVKKVLASHKCQMDRSREQYARDLAALEQQCDEHRRRAKELKHKSQ
280 290 300 310 320 330
360 370 380 390 400
pF1KB8 TVQNVV--LMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSM
..::. : ::: : : ::::: : .: . : . : ...: . .: : .
CCDS13 HLSNVLMTLTPVSLPPPVKRPRLARATSGPAAMASQVLTQSAQLALGPGVPVPQLTSVPL
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB8 GNI----PVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHP-SSSLALL
:.. : ..:..:: . . :..: : : ::..:. :. :.:: ::: .:::..:
CCDS13 GKVVSTLPSTVLGKGSLQAPPASSPASPLLGGY-TVLASSGSTYPSTVEIHPDASSLTVL
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB8 SSTAMQDGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDP--APDPEA
:..:.:::::. .:::..:... :: ..: : ..: ..::. . :: ::
CCDS13 STAAVQDGSTV---FKVVSPLQLLTLP-GLGPTLQNVAQASPGSSTIVTVPAGAAPGPEE
460 470 480 490 500 510
530 540 550 560
pF1KB8 EDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
CCDS13 HTATIEVAAMAEDHERK
520 530
563 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:15:13 2016 done: Fri Nov 4 10:15:13 2016
Total Scan time: 2.240 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]