Result of FASTA (ccds) for pF1KB8174
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8174, 563 aa
  1>>>pF1KB8174 563 - 563 aa - 563 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6769+/-0.00101; mu= 3.7183+/- 0.061
 mean_var=172.0862+/-34.641, 0's: 0 Z-trim(109.4): 25  B-trim: 0 in 0/53
 Lambda= 0.097769
 statistics sampled from 10844 (10861) to 10844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS328.1 GMEB1 gene_id:10691|Hs108|chr1           ( 563) 3613 522.0 7.4e-148
CCDS327.1 GMEB1 gene_id:10691|Hs108|chr1           ( 573) 3336 483.0 4.3e-136
CCDS13528.1 GMEB2 gene_id:26205|Hs108|chr20        ( 530)  695 110.4 5.5e-24


>>CCDS328.1 GMEB1 gene_id:10691|Hs108|chr1                (563 aa)
 initn: 3613 init1: 3613 opt: 3613  Z-score: 2768.0  bits: 522.0 E(32554): 7.4e-148
Smith-Waterman score: 3613; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)

               10        20        30        40        50        60
pF1KB8 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGIYEAGSENNTAVVAVET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKCVKFNDQLISP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKFDLLISSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMATEEGVKKDSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDAAVLNNVAHT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 FGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQTVQNVVLMP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMGNIPVATLSQG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 SSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 MVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAVILETELRTEE
              490       500       510       520       530       540

              550       560   
pF1KB8 KVVAEMEEHQHQVHNVEIVVLED
       :::::::::::::::::::::::
CCDS32 KVVAEMEEHQHQVHNVEIVVLED
              550       560   

>>CCDS327.1 GMEB1 gene_id:10691|Hs108|chr1                (573 aa)
 initn: 3336 init1: 3336 opt: 3336  Z-score: 2556.8  bits: 483.0 E(32554): 4.3e-136
Smith-Waterman score: 3583; 98.3% identity (98.3% similar) in 573 aa overlap (1-563:1-573)

               10        20        30        40                  50
pF1KB8 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQG----------IYEAGSE
       :::::::::::::::::::::::::::::::::::::::::::          :::::::
CCDS32 MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQGLFIDGHFYNRIYEAGSE
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB8 NNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNTAVVAVETHTIHKIEEGIDTGTIEANEDMEIAYPITCGESKAILLWKKFVCPGINVKC
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KB8 VKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKFNDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRS
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KB8 TKFDLLISSARAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TKFDLLISSARAPVPGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMA
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KB8 TEEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTD
              250       260       270       280       290       300

              300       310       320       330       340       350
pF1KB8 AAVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AAVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKS
              310       320       330       340       350       360

              360       370       380       390       400       410
pF1KB8 QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSMG
              370       380       390       400       410       420

              420       430       440       450       460       470
pF1KB8 NIPVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NIPVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQ
              430       440       450       460       470       480

              480       490       500       510       520       530
pF1KB8 DGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDPAPDPEAEDTEGKAV
              490       500       510       520       530       540

              540       550       560   
pF1KB8 ILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
       :::::::::::::::::::::::::::::::::
CCDS32 ILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
              550       560       570   

>>CCDS13528.1 GMEB2 gene_id:26205|Hs108|chr20             (530 aa)
 initn: 1232 init1: 602 opt: 695  Z-score: 544.0  bits: 110.4 E(32554): 5.5e-24
Smith-Waterman score: 1254; 41.2% identity (70.5% similar) in 539 aa overlap (1-521:1-512)

               10          20        30         40          50     
pF1KB8 MANAEVSVPVGDVVVV--PTEGNEGENPEDTKTQVIL-QLQPVQQGIYEAG--SENNTAV
       ::. .::: . .::::  :  . .: . : .:: ..  .: :    . : .  .:: .:.
CCDS13 MATPDVSVHMEEVVVVTTPDTAVDGSGVEGVKTVLVTTNLAPHGGDLTEDNMETENAAAA
               10        20        30        40        50        60

          60        70        80          90       100       110   
pF1KB8 VAVETHTIHKIEEGIDTGTIEANEDME--IAYPITCGESKAILLWKKFVCPGINVKCVKF
       .:.   .  ...:.. .   : .:..:  :.::::::.:.: :.:.::::::::::::..
CCDS13 AAAAFTASSQLKEAVLVKMAEEGENLEAEIVYPITCGDSRANLIWRKFVCPGINVKCVQY
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB8 NDQLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQIDFYQHDKVCSNTCRSTKF
       ....::::.::::::::::::::::::..::::::.::::..:::::::::::::::::.
CCDS13 DEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGELDFYQHDKVCSNTCRSTKI
              130       140       150       160       170       180

           180         190       200       210       220       230 
pF1KB8 DLLISSARAPV--PGQQTSVVQTPTSADGSITQIAISEESMEEAGLEWNSALTAAVTMAT
       ::  :.::. .  : .   .  ::..:: . .  .:. :. :. : .:..:         
CCDS13 DL--SGARVSLSSPTSAEYIPLTPAAADVNGSPATITIETCEDPG-DWTAA---------
                190       200       210       220                  

             240       250       260       270       280       290 
pF1KB8 EEGVKKDSEEISEDTLMFWKGIADVGLMEEVVCNIQKEIEELLRGVQQRLIQAPFQVTDA
                 :..::. ::.:. :.::..::. ....:. : .::.:::. . :.:. ::
CCDS13 ----------IGDDTFTFWRGLKDAGLLDEVIQEFHQELVETMRGLQQRVQDPPLQLRDA
                230       240       250       260       270        

             300       310       320       330       340       350 
pF1KB8 AVLNNVAHTFGLMDTVKKVLDNRRNQVEQGEEQFLYTLTDLERQLEEQKKQGQDHRLKSQ
       ..:::....::..: ::::: ... :.....::.   :. ::.: .:....... . :::
CCDS13 VLLNNIVQNFGMLDLVKKVLASHKCQMDRSREQYARDLAALEQQCDEHRRRAKELKHKSQ
      280       290       300       310       320       330        

               360       370       380       390       400         
pF1KB8 TVQNVV--LMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQPQFTVISPITITPVGQSFSM
        ..::.  : ::: : : ::::: : .:  .   :  . :    ...: . .:   :  .
CCDS13 HLSNVLMTLTPVSLPPPVKRPRLARATSGPAAMASQVLTQSAQLALGPGVPVPQLTSVPL
      340       350       360       370       380       390        

     410           420       430       440       450        460    
pF1KB8 GNI----PVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSPDTVTIHP-SSSLALL
       :..    : ..:..::  .   . :..: :  : ::..:. :. :.:: ::: .:::..:
CCDS13 GKVVSTLPSTVLGKGSLQAPPASSPASPLLGGY-TVLASSGSTYPSTVEIHPDASSLTVL
      400       410       420       430        440       450       

          470       480       490       500       510         520  
pF1KB8 SSTAMQDGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQTIIEIDP--APDPEA
       :..:.:::::.     .:::..:...  ::  ..: : ..:  ..::. .    :: :: 
CCDS13 STAAVQDGSTV---FKVVSPLQLLTLP-GLGPTLQNVAQASPGSSTIVTVPAGAAPGPEE
       460          470       480        490       500       510   

            530       540       550       560   
pF1KB8 EDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEIVVLED
                                                
CCDS13 HTATIEVAAMAEDHERK                        
           520       530                        




563 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:15:13 2016 done: Fri Nov  4 10:15:13 2016
 Total Scan time:  2.240 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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