FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8183, 204 aa
  1>>>pF1KB8183 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1941+/-0.000653; mu= 10.5712+/- 0.040
 mean_var=91.7445+/-18.267, 0's: 0 Z-trim(113.4): 3  B-trim: 210 in 1/50
 Lambda= 0.133901
 statistics sampled from 14063 (14064) to 14063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.432), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS13503.1 MRGBP gene_id:55257|Hs108|chr20        ( 204) 1369 273.4 6.6e-74


>>CCDS13503.1 MRGBP gene_id:55257|Hs108|chr20             (204 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1440.4  bits: 273.4 E(32554): 6.6e-74
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB8 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS
              130       140       150       160       170       180

              190       200    
pF1KB8 RVTDKVLTANSNPSSPSAAKRRRT
       ::::::::::::::::::::::::
CCDS13 RVTDKVLTANSNPSSPSAAKRRRT
              190       200    




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:18:21 2016 done: Fri Nov  4 10:18:21 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]