FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8183, 204 aa
  1>>>pF1KB8183 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3395+/-0.000276; mu= 9.6257+/- 0.017
 mean_var=98.7592+/-19.716, 0's: 0 Z-trim(120.8): 1  B-trim: 1262 in 1/55
 Lambda= 0.129058
 statistics sampled from 36630 (36631) to 36630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.429), width:  16
 Scan time:  5.650

The best scores are:                                      opt bits E(85289)
NP_060740 (OMIM: 611157) MRG/MORF4L-binding protei ( 204) 1369 264.2   1e-70


>>NP_060740 (OMIM: 611157) MRG/MORF4L-binding protein [H  (204 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1390.6  bits: 264.2 E(85289): 1e-70
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB8 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS
              130       140       150       160       170       180

              190       200    
pF1KB8 RVTDKVLTANSNPSSPSAAKRRRT
       ::::::::::::::::::::::::
NP_060 RVTDKVLTANSNPSSPSAAKRRRT
              190       200    




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:18:22 2016 done: Fri Nov  4 10:18:23 2016
 Total Scan time:  5.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]