FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8199, 206 aa
  1>>>pF1KB8199 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4525+/-0.000652; mu= 15.5760+/- 0.040
 mean_var=97.4051+/-19.365, 0's: 0 Z-trim(113.5): 7  B-trim: 0 in 0/50
 Lambda= 0.129952
 statistics sampled from 14168 (14175) to 14168 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.435), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS34185.1 BTF3 gene_id:689|Hs108|chr5            ( 206) 1334 259.1 1.4e-69
CCDS4019.1 BTF3 gene_id:689|Hs108|chr5             ( 162) 1015 199.2 1.2e-51
CCDS30713.1 BTF3L4 gene_id:91408|Hs108|chr1        ( 158)  804 159.7 9.2e-40
CCDS44146.1 BTF3L4 gene_id:91408|Hs108|chr1        ( 100)  469 96.7 5.3e-21
CCDS58001.1 BTF3L4 gene_id:91408|Hs108|chr1        (  78)  323 69.2 7.8e-13


>>CCDS34185.1 BTF3 gene_id:689|Hs108|chr5                 (206 aa)
 initn: 1334 init1: 1334 opt: 1334  Z-score: 1362.9  bits: 259.1 E(32554): 1.4e-69
Smith-Waterman score: 1334; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
              130       140       150       160       170       180

              190       200      
pF1KB8 ATGEDDDDEVPDLVENFDEASKNEAN
       ::::::::::::::::::::::::::
CCDS34 ATGEDDDDEVPDLVENFDEASKNEAN
              190       200      

>>CCDS4019.1 BTF3 gene_id:689|Hs108|chr5                  (162 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1041.0  bits: 199.2 E(32554): 1.2e-51
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 162 aa overlap (45-206:1-162)

           20        30        40        50        60        70    
pF1KB8 RGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKK
                                     ::::::::::::::::::::::::::::::
CCDS40                               MKETIMNQEKLAKLQAQVRIGGKGTARRKK
                                             10        20        30

           80        90       100       110       120       130    
pF1KB8 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KB8 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
              100       110       120       130       140       150

          200      
pF1KB8 ENFDEASKNEAN
       ::::::::::::
CCDS40 ENFDEASKNEAN
              160  

>>CCDS30713.1 BTF3L4 gene_id:91408|Hs108|chr1             (158 aa)
 initn: 808 init1: 689 opt: 804  Z-score: 827.4  bits: 159.7 E(32554): 9.2e-40
Smith-Waterman score: 804; 81.6% identity (93.0% similar) in 158 aa overlap (50-206:1-158)

      20        30        40        50        60        70         
pF1KB8 GGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                     ::::::::::::::::::::::::::::::
CCDS30                               MNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                             10        20        30

      80        90       100       110       120       130         
pF1KB8 TATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAE
       :::::::::: :::::.::::.:::::::. ..:::::::::::::::.::::.::::::
CCDS30 TATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAE
               40        50        60        70        80        90

     140       150       160       170       180        190        
pF1KB8 TKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDD-DDEVPDLVENFD
       .: .:::::.::.:::::::::::.::: .:.: .:.:::     :. ::.:::::::::
CCDS30 AKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFD
              100       110       120       130       140       150

      200      
pF1KB8 EASKNEAN
       ::::::::
CCDS30 EASKNEAN
               

>>CCDS44146.1 BTF3L4 gene_id:91408|Hs108|chr1             (100 aa)
 initn: 473 init1: 354 opt: 469  Z-score: 490.5  bits: 96.7 E(32554): 5.3e-21
Smith-Waterman score: 469; 74.0% identity (90.0% similar) in 100 aa overlap (108-206:1-100)

        80        90       100       110       120       130       
pF1KB8 HRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGH
                                     :. ..:::::::::::::::.::::.::::
CCDS44                               MIKDDGTVIHFNNPKVQASLSANTFAITGH
                                             10        20        30

       140       150       160       170       180        190      
pF1KB8 AETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDD-DDEVPDLVEN
       ::.: .:::::.::.:::::::::::.::: .:.: .:.:::     :. ::.:::::::
CCDS44 AEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVEN
               40        50        60        70        80        90

        200      
pF1KB8 FDEASKNEAN
       ::::::::::
CCDS44 FDEASKNEAN
              100

>>CCDS58001.1 BTF3L4 gene_id:91408|Hs108|chr1             (78 aa)
 initn: 323 init1: 323 opt: 323  Z-score: 343.9  bits: 69.2 E(32554): 7.8e-13
Smith-Waterman score: 323; 94.6% identity (98.2% similar) in 56 aa overlap (50-105:1-56)

      20        30        40        50        60        70         
pF1KB8 GGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                     ::::::::::::::::::::::::::::::
CCDS58                               MNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                             10        20        30

      80        90       100       110       120       130         
pF1KB8 TATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAE
       :::::::::: :::::.::::.::::                                  
CCDS58 TATADDKKLQSSLKKLAVNNIAGIEESWTVKHQNQKTLMRKMMMFQIL            
               40        50        60        70                    




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:29:22 2016 done: Fri Nov  4 10:29:23 2016
 Total Scan time:  2.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]