FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8200, 372 aa
  1>>>pF1KB8200 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9328+/-0.000942; mu= 13.2525+/- 0.056
 mean_var=77.8598+/-15.922, 0's: 0 Z-trim(105.8): 69  B-trim: 3 in 1/51
 Lambda= 0.145351
 statistics sampled from 8537 (8597) to 8537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS5661.1 ARPC1B gene_id:10095|Hs108|chr7         ( 372) 2565 547.6 6.6e-156
CCDS5660.1 ARPC1A gene_id:10552|Hs108|chr7         ( 370) 1851 397.8 7.8e-111


>>CCDS5661.1 ARPC1B gene_id:10095|Hs108|chr7              (372 aa)
 initn: 2565 init1: 2565 opt: 2565  Z-score: 2912.5  bits: 547.6 E(32554): 6.6e-156
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
              310       320       330       340       350       360

              370  
pF1KB8 SLESALKDLKIK
       ::::::::::::
CCDS56 SLESALKDLKIK
              370  

>>CCDS5660.1 ARPC1A gene_id:10552|Hs108|chr7              (370 aa)
 initn: 1504 init1: 1183 opt: 1851  Z-score: 2103.3  bits: 397.8 E(32554): 7.8e-111
Smith-Waterman score: 1851; 68.1% identity (89.0% similar) in 373 aa overlap (1-371:1-369)

               10        20        30        40        50        60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
       :. :.::.:::.:::::.::::::. :::::::::.:.:..:.:.::::::::..:::::
CCDS56 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
       ::.:.::::::.:::::::. :  .::::::::::::::  :.:.: :::::::::.:.:
CCDS56 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
       :.::::.:::::: :::::::::::::::::::::::::::::::::.::::::::.:.:
CCDS56 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP
              130       140       150       160       170       180

              190         200       210       220       230        
pF1KB8 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA
       : ::::::::::.::  : .:.. :::::: :::::::.::::::::: .:::.:.. :.
CCDS56 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KB8 TLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTA
       :: .: ::::...:...::.::::::: :.::.::   : :.: ..::.:::: ::...:
CCDS56 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDR-GCLTFVSKLDIPKQSIQRNMSA
              250       260       270        280       290         

      300       310       320       330       340       350        
pF1KB8 RERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD
        :::.:.::.:..:  ..:   :..::.::..:.:.    :  : .:::::.::.:.:::
CCDS56 MERFRNMDKRATTEDRNTA---LETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD
     300       310          320       330       340       350      

      360       370  
pF1KB8 VKSLESALKDLKIK
        :.:::... :.: 
CCDS56 FKTLESSIQGLRIM
        360       370




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:29:55 2016 done: Fri Nov  4 10:29:55 2016
 Total Scan time:  2.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]