Result of FASTA (ccds) for
pF1KB8204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8204, 470 aa
1>>>pF1KB8204 470 - 470 aa - 470 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5274+/-0.00103; mu= 1.7048+/- 0.062
mean_var=278.7547+/-56.531, 0's: 0 Z-trim(113.8): 13 B-trim: 152 in 1/52
Lambda= 0.076818
statistics sampled from 14432 (14439) to 14432 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.444), width: 16
Scan time: 2.450
The best scores are: opt bits E(32554)
CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 470) 3176 365.1 9.2e-101
CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 483) 3082 354.6 1.3e-97
CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 515) 2363 275.0 1.3e-73
CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 474) 1866 219.9 4.7e-57
CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 531) 1855 218.7 1.2e-56
CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 483) 1849 218.0 1.8e-56
CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 456) 1817 214.4 2e-55
>>CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 (470 aa)
initn: 3176 init1: 3176 opt: 3176 Z-score: 1922.5 bits: 365.1 E(32554): 9.2e-101
Smith-Waterman score: 3176; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)
10 20 30 40 50 60
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
430 440 450 460 470
>>CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 (483 aa)
initn: 3082 init1: 3082 opt: 3082 Z-score: 1866.0 bits: 354.6 E(32554): 1.3e-97
Smith-Waterman score: 3082; 100.0% identity (100.0% similar) in 457 aa overlap (14-470:27-483)
10 20 30 40
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
::::::::::::::::::::::::::::::::::
CCDS34 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 APAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB8 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB8 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
430 440 450 460 470 480
470
pF1KB8 RNT
:::
CCDS34 RNT
>>CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 (515 aa)
initn: 2374 init1: 1619 opt: 2363 Z-score: 1435.0 bits: 275.0 E(32554): 1.3e-73
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (3-470:54-515)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
:: .: :::: :.:: :: :::
CCDS87 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
30 40 50 60 70
40 50 60 70 80 90
pF1KB8 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
CCDS87 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
CCDS87 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
140 150 160 170 180 190
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
CCDS87 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
CCDS87 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
CCDS87 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB8 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
CCDS87 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
380 390 400 410 420 430
390 400 410 420 430 440
pF1KB8 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
CCDS87 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
440 450 460 470 480 490
450 460 470
pF1KB8 VSRYFYCKIQQRRQELEQSLVVRNT
: :::: :.:::::::::.: .:::
CCDS87 VCRYFYSKVQQRRQELEQALGIRNT
500 510
>>CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 (474 aa)
initn: 1877 init1: 1113 opt: 1866 Z-score: 1137.8 bits: 219.9 E(32554): 4.7e-57
Smith-Waterman score: 2061; 67.8% identity (80.0% similar) in 475 aa overlap (3-470:54-474)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
:: .: :::: :.:: :: :::
CCDS87 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
30 40 50 60 70
40 50 60 70 80 90
pF1KB8 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:: : :.:.:::::: .::. .::: : : : : : : : : . :...::..::::
CCDS87 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
CCDS87 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
140 150 160 170 180 190
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
:::: ::::..:..:::::::::.::.: .:::::::::::::::::::::::
CCDS87 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB8 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
CCDS87 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB8 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
.: .:.::::::.::..::: :..:.. :::.::::. :.::::::::: :::.::.:
CCDS87 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
320 330 340 350 360 370
330 340 350 360 370 380
pF1KB8 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
:.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:
CCDS87 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNK-------
380 390 400 410 420
390 400 410 420 430 440
pF1KB8 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
.::::.:::::::::::: :::.:::
CCDS87 ----------------------------------TMTDVVGNPEEERRAEFYFQPWAQEA
430 440
450 460 470
pF1KB8 VSRYFYCKIQQRRQELEQSLVVRNT
: :::: :.:::::::::.: .:::
CCDS87 VCRYFYSKVQQRRQELEQALGIRNT
450 460 470
>>CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 (531 aa)
initn: 2197 init1: 1676 opt: 1855 Z-score: 1130.6 bits: 218.7 E(32554): 1.2e-56
Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (4-470:63-531)
10 20 30
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP
: : . ::::: : ::: : .:::
CCDS45 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
:::. .. .:::. :. :.: ::: : ::: : ::. :. :::::::
CCDS45 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD
100 110 120 130 140
100 110 120 130 140 150
pF1KB8 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
:.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.::::::
CCDS45 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
.:.: .. :: :. .::::::::::::::::::::::::::::::::::
CCDS45 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL
:.::::::::::::: :::::::::::::::::.:.::::::::.::::.::::::::::
CCDS45 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB8 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL
:.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..::
CCDS45 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL
330 340 350 360 370 380
330 340 350 360 370 380
pF1KB8 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH
::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::
CCDS45 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH
390 400 410 420 430 440
390 400 410 420 430 440
pF1KB8 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP
:::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: :::::
CCDS45 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP
450 460 470 480 490 500
450 460 470
pF1KB8 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT
:.::::.:... :.::::::::: : .: :
CCDS45 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT
510 520 530
>>CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 (483 aa)
initn: 2197 init1: 1676 opt: 1849 Z-score: 1127.5 bits: 218.0 E(32554): 1.8e-56
Smith-Waterman score: 2253; 71.3% identity (85.6% similar) in 471 aa overlap (13-470:24-483)
10 20 30 40
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLA
::::: : ::: : .::: :::. .. .:::.
CCDS82 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQA
:. :.: ::: : ::: : ::. :. ::::::::.::::::::::::::
CCDS82 PTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 YMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS---
::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. :: :.
CCDS82 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGT
120 130 140 150 160
170 180 190 200 210
pF1KB8 ---------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
.:::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS82 PGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRM
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB8 PTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
:::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.::.::::
CCDS82 PTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWL
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDP
:.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::
CCDS82 YIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDP
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB8 SDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFM
.::::::::::::::..:::.:::.:: ::.:::::..:: ::::::::::::: :::::
CCDS82 NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFM
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 LSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQ
:::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:... :.::
CCDS82 LSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQ
410 420 430 440 450 460
460 470
pF1KB8 RRQELEQSLVVRNT
::::::: : .: :
CCDS82 RRQELEQVLGIRLT
470 480
>>CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 (456 aa)
initn: 2215 init1: 1676 opt: 1817 Z-score: 1108.7 bits: 214.4 E(32554): 2e-55
Smith-Waterman score: 2221; 71.1% identity (85.4% similar) in 467 aa overlap (17-470:1-456)
10 20 30 40 50
pF1KB8 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRA
: : ::: : .::: :::. .. .:::. :. :.: :::
CCDS82 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
10 20 30 40
60 70 80 90 100 110
pF1KB8 APPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKL
: ::: : ::. :. ::::::::.:::::::::::::::::::::::::
CCDS82 LVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKL
50 60 70 80 90
120 130 140 150 160
pF1KB8 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IA
:::: :::..::::.:.:. ::::::.::::::.:.: .. :: :. .:
CCDS82 DQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVA
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
::::::::::::::::::::::::::::::::::.::::::::::::: :::::::::::
CCDS82 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQV
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB8 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
::::::.:.::::::::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.:
CCDS82 KRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGH
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB8 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::.::::::::::
CCDS82 EREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDI
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB8 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
::::..:::.:::.:: ::.:::::..:: ::::::::::::: ::::::::: ::. ..
CCDS82 DVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB8 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
:. :::: ::::..::: ::::::::: ::::::.::::.:... :.::::::::: : .
CCDS82 QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGI
400 410 420 430 440 450
470
pF1KB8 RNT
: :
CCDS82 RLT
470 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:31:48 2016 done: Fri Nov 4 10:31:48 2016
Total Scan time: 2.450 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]